Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_2534 |
Symbol | |
ID | 5695385 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 3066913 |
End bp | 3069327 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641265143 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001530415 |
Protein GI | 158522545 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.401637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGGTG GAAAAATGGC AAATATCCTC AAAAAGGCAA TAAAAGCCCT CGCCCTGCTG ATGGTGATCG GCATGGTCAT CGCCGTGGTA GCGGGGGGCG TGTTCTATTA CCAGATCAGC CGGGATCTGC CCCGGATATT TACTATTGAT GACTACCGCC CGCCGACGGT CACCACCCTC TATTCCGCTG AAAAGCAAAA GATCGCCGAA TTTTACACAG AGCGGCGTAT CGTGGTGCCC TTAGACCGCA TGCCGCCCAT GCTGATCAAC GCCTTTGTGG CGGCGGAGGA TGCCCGGTTT TTTCAGCATA CCGGCGTGGA CCTGACCGGT GTGGCCCGGG CATTCATGAA AAACCTGGAG GCCGGTGCCA TTGTTCAGGG CGGCAGCACC ATCACCCAGC AGGTGGCCAA GTCCTTTTTT CTGTCGTCCG AGCGGACCTA CACGCGAAAG ATCAGGGAGG CGATCCTTTC TTATCGAATT GAGAAGCGGT TCTCCAAGGC AGATATTCTC TATCTTTACT TAAACCAGAT ATACCTTGGC CATGGCGCTT ATGGCGTGGC CGCGGCCGCG GAAAACTATT TCGGCAAGCC CGTGGAAGAA CTCTCCCTGG CCGAATGCAC GCTGATTGCC GGGCTTCCCC AGGCCCCCAG CCGCTACTCG CCGTACCGGT ACCCGGCCCG GGCCAAGAAC CGGCAACTCT ATGTGTTAAA CCAGATGGTC ACCGGGGGGT ATATCTCCGA GGCAGAGGCC CAGGCAGCCC GGGAGGCGGA ACTGGAAATC CAGCCGGTGC GGAGCCTGTT CCAGGAGAAT GCCCCGTGGT ATGCCGAGCA TGTCCGCCGG TACGTGGAAG CCAAATACGG GCGGGACACG CTTTACAACC AGGGGCTCTC GGTGTACACA GCCGTGGATC TTTCCATGCA GGAGGCGGCC CGGCGCGAGG TGGACAGGGG ATTGCGGGAC CTGGACAAAC GGCAGGGGTA CCGCGGCCCT ATTCGTCGTA TTTCCGAAGA AGAGATCGAG CCTTTTCTGT CCTCCCTGCG GGAGGAGGCC CTCGGGAAGA TGGAGCTGGC CGTCGTGGGA GACATTGTCC AGGGCGTGGT GGTGGATGTG GACGATGAAA AAGAGAGCGC GTGGGTGCGC CTGGCCCACG GCGCCGGAGA GATCCCCCTT GAGGAGATGA AGTGGGCCCG CCGGCCCGAC CCAGGGGTGG CATGGTACCA GTCGGCCGCT ACGATCAAAA AACCTTCCCA GGCTTTGAAA ACAGGGGATG TGATATGGGT GAGAATTGTC AGCCTTGCGG AATCGCCTGA GAATATGGCC CCGGCGGCTG AGGACCGGGC GCTGGGTACC GCTGTTTTAC GGCTCTCCCT GGAACAGGAG CCGGCGGTGG AAGCGGCCCT GATCTGTATG GAGGCCAGGC CCGGCCTTGT GCGGGCCATG ATCGGGGGCC GGGACGCGGC AAAAAGCCAG TTCAACCGGG CCGTCCAGGC CATACGGCAG CCGGGATCGG CCTTCAAGCC CATTATTTAC GCGGCGGCCC TGGACAAGGG GTATACACCG GCCAGCGTGA TCATCGACTC GGCCATCGTG TTTGAAGACA CGGCCCGCAA TTTCACATGG AAACCCCAGA ACTATGAAGA ACGGTTTTTC GGCCCCACCC TGTTCCGCCG GGCACTGGAA AAGTCCCACA ATATTCCCAC CATCAAAATT CTGATGGATA TCGGGGTGGA TTATATTCAT GACTACGCGA AAAAACTGGG CATTACTTCC CCTTTGAGCC GGGATCTTTC CATCGCCCTG GGGTCATCGG GCCTTGCGCC GGTTGAACTG GCAAAGGCTT ATGCCGTGTT TGCCAATATG GGCGACCGGG TTGAACCGGT GTTTATTACC CGGATAGAGG ACAGGGAGGG CCGGGTGCTG GAGGAAAATC GAGCCGAGCC GGTCCATGTT ATCGGCAGCG ACACCGCTTA TATCATGACC CACCTGCTCG AGGGGGTGGT GGAACACGGC ACCGGACGCC GGGCCAGGGA GCTGAACCGG CCGGCCGCGG GCAAAACCGG CACCACCGAC AACCTGAACG ACGCCTGGTT TGTGGGGTAC ACCCCTGATT TCGTGACCGT GGTGTGGGTG GGTTTTGACG AGGAGCAGTC CCTGGGCAAG GGAGAGACCG GGGCCAGCGC GGCCAGCCCC ATCTGGCTGG GGTTCATGCA GACCATACTG GCCGGCAAAC CGGTGAAGGA GTTCGAGGTG CCCGAGGGCG TGGTGTTTTC CCGCATTGAC GCCGAAACCG GGCTGCTGGC AACCGATGAC TCCCGGGAAA CCTTTTTTGA GTGTTTCAAG AAGGGCACCG AACCCACCGA GTATGCCGAA CCCGCCGATA CGGTGGATGA GGAGGGTTTT TTCAAGGGCA TGTAA
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Protein sequence | MTGGKMANIL KKAIKALALL MVIGMVIAVV AGGVFYYQIS RDLPRIFTID DYRPPTVTTL YSAEKQKIAE FYTERRIVVP LDRMPPMLIN AFVAAEDARF FQHTGVDLTG VARAFMKNLE AGAIVQGGST ITQQVAKSFF LSSERTYTRK IREAILSYRI EKRFSKADIL YLYLNQIYLG HGAYGVAAAA ENYFGKPVEE LSLAECTLIA GLPQAPSRYS PYRYPARAKN RQLYVLNQMV TGGYISEAEA QAAREAELEI QPVRSLFQEN APWYAEHVRR YVEAKYGRDT LYNQGLSVYT AVDLSMQEAA RREVDRGLRD LDKRQGYRGP IRRISEEEIE PFLSSLREEA LGKMELAVVG DIVQGVVVDV DDEKESAWVR LAHGAGEIPL EEMKWARRPD PGVAWYQSAA TIKKPSQALK TGDVIWVRIV SLAESPENMA PAAEDRALGT AVLRLSLEQE PAVEAALICM EARPGLVRAM IGGRDAAKSQ FNRAVQAIRQ PGSAFKPIIY AAALDKGYTP ASVIIDSAIV FEDTARNFTW KPQNYEERFF GPTLFRRALE KSHNIPTIKI LMDIGVDYIH DYAKKLGITS PLSRDLSIAL GSSGLAPVEL AKAYAVFANM GDRVEPVFIT RIEDREGRVL EENRAEPVHV IGSDTAYIMT HLLEGVVEHG TGRRARELNR PAAGKTGTTD NLNDAWFVGY TPDFVTVVWV GFDEEQSLGK GETGASAASP IWLGFMQTIL AGKPVKEFEV PEGVVFSRID AETGLLATDD SRETFFECFK KGTEPTEYAE PADTVDEEGF FKGM
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