| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2471 |
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| Symbol | |
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| ID | 5695320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2995519 |
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| End bp | 2997450 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265078 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001530352 |
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| Protein GI | 158522482 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACAC GCAATCGACT GTCAACAGTG GCCATCTGCC TTTTCCTGGT TCTTTCCGCC
CTGTGGGTCT ATCACCCGAT CCGCCACCAC GCGCCCACCA ACTGCGACGA TTTTTACCTG
ACGCAAAACA CCTTTATTAT GGAACAATCC GGATGGAACC TGAAGACCCT TGTCTACGGG
GCCACCCAAG CACCCACCGG CGTCTGGATG CCCATCACAG GGCTTCTTGT CGTTTTTGAG
CATTTCCTGT TCGGCACCGA CTTCGGCCTT TACCGCATGG GAAATCTGCT GCTTCACATG
GCCAACGGCA TACTCCTGTT CTTCGCGTTG CGCCGAATGA CCGGGGCCTT GTGGAAAAGC
GGCCTGGTGG CGGCCCTGTT TGTTCTCCAT CCCCTTAACG TGGAACCCGT AGCCTGGCTG
GTGGGCATTC GGGTGGTACT GTGCGCCTTT TTCGGCCTGG CGGCCATCTA TTGGTATGCC
AGTGCCGTCA GACGGCCGGC CACATGGAAA TATGTCGTCT CCCTGTTTTC CGTCTCCCTG
AGCATCACTT CGGTGGCCAT GTACGTGACC CTGCCCTTTG TGCTGCTGCT GATCGACTAT
TGGCCCCTGG AACGAAAACC GCTTTTTATC ACCCGTCCGG ATACCGGCGG TTCAGGCTTC
AACTGGTCCG GCGCAGGCCG CCTTTTGTGG GAAAAAATGC CCTTTTTCGT TCTGATTCTG
GGCATGTCCG CCATTGTGCT GGCCGCTCAT GACCTGCCTT TTGTTCACCA TCACCCCCTG
GCCCACCGGA TTTTAAATGT TCCCCTTGCT TATGTTCAAT ACCTGGCAAA ATTCTTTTTT
CCAACCGGGC TGTCTGTCTT TTATCCGCTG CCCGTGGAAT TTCCCGTATG GAAAGTGGCC
GGCGCCGTTT TTCTCCTGCT GGCCGTCACC GTTGGGGCAC TGCGCGCCGC CAAAACCCAT
CGGTTTTTTA TCGTGGGCTG GCTCTGGTTT GCCGGCATGA TGGTGCCGTT GAGCGGCATC
GCCCAGATCG GCACCCAGGC CATGGCCGAC CATTACATGT ACCTGCCCAT GATCGGCCTG
TTGATAGCCG TTGTGTGGGG GGCAGACGCG GTTATGGGAA ACTGGAAACA CAAAGCCGCT
GCCTCATGGA CAGCCACAGT CGTGGTGCTG GCCCTTTTTA CAGGGCTAAG CGCCCGCCAG
GTGGGCGTGT GGAAAAACTC CTTTACCCTG CTGAATCACG CCCTGGCTGT CACGAAAAAC
AACTACGAAG CCCACAACCA CCTGGGCCAG GCCTTTGCCG AGGCAGGGGA TAATCAAAAC
GCCATCGGCC ATTTTATTCA GGCCCTGGCC ATTCGGCCCG ATCACGCCAA GTCCCACCAC
AACCTGGCCA ATGTCTACGT GCGGACCGGC AACCTGGAAA AGGCGGAACA CCATTACCAA
CAGGCCCTGG TTGCGGACCC GGAAAATGCC GCCACCTTTA ACAGCCTGGG CCTTGTGCAG
GCGGCCCAGG GCCGCCTGCA CAAGGCCATT GCCAGCTACC AAAAGGCGCT GGCACTGGCG
CCCGACTTTG CCCACGCGCA TCACAACCTG GCAAGAGCCA TGGCCGTTAG CGACCGCCTC
GAAGAGGCCG AGGTCCATTA CCAGCGGGCC CTGGCCATTA ACCCGGACAT GGCCGGTACC
CGGCTCCAGC TGGCTGAAAT CCTGACCCTC AAAAACAGAC CGGCCGAGGC TGCCCGCCAC
TATGAAATAC TGACCGGGCA GGCTCCGGCA TCCGCCGACC TGAACTACCT TGCCGGCCGG
GCCTTTTATG AAAGCGGACA GACCGCAAAA GCCCGCCCTT ACCTTGAACA GGCACTGGCC
ATCAATCCGC AAATGAAGGC GGCGCAAGAC CTCCTGCTGC GAATGGACCA GACCTTGCCT
GCGGACCATT GA
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| Protein sequence | METRNRLSTV AICLFLVLSA LWVYHPIRHH APTNCDDFYL TQNTFIMEQS GWNLKTLVYG
ATQAPTGVWM PITGLLVVFE HFLFGTDFGL YRMGNLLLHM ANGILLFFAL RRMTGALWKS
GLVAALFVLH PLNVEPVAWL VGIRVVLCAF FGLAAIYWYA SAVRRPATWK YVVSLFSVSL
SITSVAMYVT LPFVLLLIDY WPLERKPLFI TRPDTGGSGF NWSGAGRLLW EKMPFFVLIL
GMSAIVLAAH DLPFVHHHPL AHRILNVPLA YVQYLAKFFF PTGLSVFYPL PVEFPVWKVA
GAVFLLLAVT VGALRAAKTH RFFIVGWLWF AGMMVPLSGI AQIGTQAMAD HYMYLPMIGL
LIAVVWGADA VMGNWKHKAA ASWTATVVVL ALFTGLSARQ VGVWKNSFTL LNHALAVTKN
NYEAHNHLGQ AFAEAGDNQN AIGHFIQALA IRPDHAKSHH NLANVYVRTG NLEKAEHHYQ
QALVADPENA ATFNSLGLVQ AAQGRLHKAI ASYQKALALA PDFAHAHHNL ARAMAVSDRL
EEAEVHYQRA LAINPDMAGT RLQLAEILTL KNRPAEAARH YEILTGQAPA SADLNYLAGR
AFYESGQTAK ARPYLEQALA INPQMKAAQD LLLRMDQTLP ADH
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