| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2445 |
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| Symbol | |
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| ID | 5695294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2956710 |
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| End bp | 2958986 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265052 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001530326 |
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| Protein GI | 158522456 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000450772 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATAAAC CGGTTATCAT TGTCGAGTCA CCGACAAAGG TCAAAACCAT TACAAAATAT
ACGGGAAACG CCTACAGCGT CACCGCCACT TCCGGTCACC TGAGGGATCT GCCGCCCCAT
GAGCTGGGCA TTGATATCGA CAACGGGTTT GCCCCCGACT ATGTCAACAT CAAAGGCAAG
CAGAAGGTAA TCAAGGCCTT GAAAAGCGCC GTGGGGGACG CCGACGATAT CTACCTGGCC
CCGGACCCGG ACCGGGAAGG CGAGGCCATC GCTTTTCACG TGGCCGACCT GCTCAAGAAA
AAGGGGCGCC GGTTTCACCG GGTGATGTTT CACGAACTCA CCAAAACAGG CATTCAAAAG
GGGCTGACCG AGCCCACGGA GCTCAACCGG AACCGGTACG ATGCCCAGCA GGCCCGGCGC
ATTCTGGACC GGCTGGTGGG GTACCAGATA TCCCCGCTCT TGTGGCGCAA GGTACGAAAC
GGCCTGAGCG CCGGCCGTGT CCAGTCTGTT GCCGTGCGCA TCATCTGCGA CCGGGAACGG
GAGATTTTCG CCTTTGATCC CCAGGAGTAC TGGTCGATCA CCGCTGCCCT GGAAGGGGCC
AATCCGCCCC GGTTCGAAGC AAAGCTGGTC AAAAAAGGGA CAAAAAACAT CACCATCGGC
AACCAGGCCG AGGCCGACCG GATCGTTGAC GAACTGTCCC GTCAGGCCTT TACCGTTGAC
AAAATCGTTC AGAAAACGAT CAAGCGAAAC CCCCAGCCGC CCTTTACCAC CAGCAAGCTG
CAACAGGAGG CCATTCGCAA GCTGGGATTT ACCGCAAAAA AAACCATGGC CGTGGCCCAG
GAGCTCTATG AAGGCATCGA CCTGGGACCC GGGGAACCCG TGGGCCTGAT CACCTACATG
CGTACCGACT CCACCCGTAT CGCCCCGGAA GCGGCCCACG AGGCCCTGGC CCATATCCGC
TCCGTGTTCG GCAATGACTA CGCGCCGGAC CGGCCCCGGT TTTTTGCCAA CAAAAACAAG
GTCCAGGACG CCCATGAAGC CATTCGGCCC ACCGGGATAT CCTACACGCC GGAGAGTGTC
AAGCGGTACC TGTCCAAAGA TCAGCTGACC CTTTATACCC TGATATGGAA ACGATTTGTG
GCCTCCCAGA TGAGCGAGGC CCAGATCGAC CAGAAGACCA TCACCATTGC CGCCGGCGAC
TACCTGCTGT CGGTCAGCGG CTCCACAGTT CGCTTCCCCG GATTCATGGC CCTTTATCAA
CCCGAGGAGG ACAAAAACGG CGCACCGGAC AAAGATAAAG GGGACAAGCT GCCGCAGCTT
GATGAAAAAG AGGTCCTTAA GCTCATCGAA CTGGATCCGA AGCAGCACTT CACCACTCCT
CCCCCGCGCT TTTCAGAAGC ATCCCTGGTC AAAGAGCTGG AAGAAAACGG CATCGGCCGG
CCCAGTACGT ATGCCACCAT CCTCTCCACC ATTCGGGACA AGGGCTACGT GGACCTGATC
AACAAGGCGT TCCGGCCCAC GGAACTGGGA TTTATCGTCA ACGACCTTCT GGTGGAAAAC
TTTCCCACCA TTTTAGACAT CGAATTTACC GCCAACATGG AAAACGACCT GGACCGCATT
GAATCCGACC AGCTTCAGGC CGTCCGCCTG CTGGAGCGGT TCTACGGTCC CTTTTCCCAG
CGGATTGAGG CCGCCAAAGA CCGAATGCGC AGCGTCAAGG GCGTGGGCAT GGACACCGGG
CTTTCCTGCC CGGAGTGCGG CAAGGAACTC AAGATCAAAC TGGGCAAGAA CGGCCCGTTT
CTGGCCTGCT CCGGGTATCC GGACTGCAAA TTTTCCCGCA ACTACGCCCG CACAGACAAG
GGGACCGTGG AGCCGGTGGA ACCGGATCTC ACCGTTGCCG AGGGAAAATC CTGCGAAAAG
TGCGGCAGCC CCATGGTGGT CAAGCAGGGC CGGTACGGTG ATTTTCTGGC CTGCTCGGCC
TATCCGGACT GCAAGAGTAC CCAGTCCCTC AACTCCGGCG CCAATGCCGC GCCCATCGGC
GTCAAGTGCC CCGAACCGGG CTGCAACGGC GATATCGTGG AAAAAAAGTC AAAAAGGGGC
AAGGTGTTTT ACGGATGCAG CCGGTTTCCC AAATGCACAT TTGCCTCCTG GGACAAGCCG
GTTGACATGG CCTGCCCCGA CTGCGGCGCC CCTTTTGTGG TGGAAAAAAC CACTAAAAAG
GAGGGCACGG TACTGACCTG CGCCAGCGAG GGGTGCGGTT TTCGGCAAAG GACATAG
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| Protein sequence | MNKPVIIVES PTKVKTITKY TGNAYSVTAT SGHLRDLPPH ELGIDIDNGF APDYVNIKGK
QKVIKALKSA VGDADDIYLA PDPDREGEAI AFHVADLLKK KGRRFHRVMF HELTKTGIQK
GLTEPTELNR NRYDAQQARR ILDRLVGYQI SPLLWRKVRN GLSAGRVQSV AVRIICDRER
EIFAFDPQEY WSITAALEGA NPPRFEAKLV KKGTKNITIG NQAEADRIVD ELSRQAFTVD
KIVQKTIKRN PQPPFTTSKL QQEAIRKLGF TAKKTMAVAQ ELYEGIDLGP GEPVGLITYM
RTDSTRIAPE AAHEALAHIR SVFGNDYAPD RPRFFANKNK VQDAHEAIRP TGISYTPESV
KRYLSKDQLT LYTLIWKRFV ASQMSEAQID QKTITIAAGD YLLSVSGSTV RFPGFMALYQ
PEEDKNGAPD KDKGDKLPQL DEKEVLKLIE LDPKQHFTTP PPRFSEASLV KELEENGIGR
PSTYATILST IRDKGYVDLI NKAFRPTELG FIVNDLLVEN FPTILDIEFT ANMENDLDRI
ESDQLQAVRL LERFYGPFSQ RIEAAKDRMR SVKGVGMDTG LSCPECGKEL KIKLGKNGPF
LACSGYPDCK FSRNYARTDK GTVEPVEPDL TVAEGKSCEK CGSPMVVKQG RYGDFLACSA
YPDCKSTQSL NSGANAAPIG VKCPEPGCNG DIVEKKSKRG KVFYGCSRFP KCTFASWDKP
VDMACPDCGA PFVVEKTTKK EGTVLTCASE GCGFRQRT
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