Gene Dole_2442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2442 
Symbol 
ID5695291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2952318 
End bp2953892 
Gene Length1575 bp 
Protein Length524 aa 
Translation table11 
GC content61% 
IMG OID641265049 
Productprotein-export membrane protein SecD 
Protein accessionYP_001530323 
Protein GI158522453 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000311445 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGAATT TCCAATGGAA ACAGGCCATC ACCCTGGCCG TTCTGGTGGC GGCCCTGATC 
TATGTTCTGC CCACCATCAA TCCGGAATGG TGGCCGAGAA AGACCATCAA CCTGGGGCTC
GACCTTCAGG GCGGCATGCA CCTGATTCTT GAGGTGGAGA CCGAAAAAGC GGTGGAGGCC
CAGATATCGG GCATTGGCCG GGACCTTGAA GAGACCCTGC GCAAAGAACG GGTCCGGCAT
ACCGATGTAA CGGCAAAGGG CCAGAAAATC AGCGTCCTTG CAAGGGGCGA AGAGAACATC
GAACGGTTCA AGCAGGTTCT GGACAAAGAT TTTGCCGGCC TGGCCATTGT CTCCTCGTCC
AGGCGTGACA ACACCCTGGA GCAGGTGCTC GGCCTTCCCG ATGACGAGGT CGCCCACCTC
AAGAAAATGG CCGTGGAGCA GGCCTTAGAG ACCATTCGCA ACCGCATCGA CCAGTTCGGG
GTCAGCGAGC CCGTCATTCA TATTCAGGGC AGACGCCAGA TTCTGGTCCA GCTGCCCGGT
GTTACCGATC CCCAGCGGGC CAAGGACCTG ATCGGCAAAA CCGCCCTGCT GGAGTTCCGG
CTGGTGGATG AGGAAAACGA CGTGGCCAAA GCGGTAAGGG GCCAGGTACC GCCGGGCAGT
GAACTGCTCT ACGAAGTCTC CACCGACCCG GATACCGGTC GAACCATCAA GTCCCCCCTG
CTGATCAAGC GCGGCACCCC CCTGACCGGC GCGGACCTGT CCGATGCCCG GGTCCAGATC
GACGCCCAGT ATAACGAGCC CTATGTTTCC ATCACCTTCA ATCGGAAAGG GGCCAATATT
TTCGCGAAAA TCACCGAGGA GAACCTGAAA AAACGGCTGG CCATTGTCCT GGACAATCAT
ATTCATTCGG CGCCGGTCAT TCAGGACCGG ATCACCGGCG GCGCGGCCCG GATCACCGGG
AGTTTTTCCA TGGACGAGGC CCATGACCTG GCCATTGTGC TGCGGGCCGG GGCCCTGCCC
GCACCGGTCA AAATTCTGGA AGAGCGGACC GTGGGGCCCT CCCTGGGCAA GGAGTCCATT
GACAAGGGCC TGATGTCCAT GTACATCGGC GGCCTGATCG TGGTGCTCTT TATGGCGACC
TACTACCGCA AGGCGGGCCT GATCGCGGAC GTCGCCCTGG TGTTCAATAT TCTGCTGATC
GCCGCGGGCC TGGCGGCCCT GGGCGCCACC CTGACCCTGC CGGGCATTGC GGGTATCATT
CTGACCATCG GCATGGCCGT GGACGCCAAC GTCATCATCT TTGAACGGAT CCGTGAGGAA
ATACGGACCG GCAAGCCCCC CCGGGCCTCG GTGGCCGCCG GGTTCGACCG GGCCGCCCTC
ACCATTCTGG ACGCCAACAT CACCACCCTG ATTGCGGCCG TGGTGCTCTT TCAATTCGGC
ACCGGCCCGG TAAAGGGATT TGCGGTCACC CTGAGCCTGG GCGTGATGGC CAGCCTGTTC
ACGGCCCTGG TGGTGTCCCG CCAGATATTC GACCTCATAT TGACCCGGCG CAAGGTCACG
CACCTGAGCA TTTAA
 
Protein sequence
MKNFQWKQAI TLAVLVAALI YVLPTINPEW WPRKTINLGL DLQGGMHLIL EVETEKAVEA 
QISGIGRDLE ETLRKERVRH TDVTAKGQKI SVLARGEENI ERFKQVLDKD FAGLAIVSSS
RRDNTLEQVL GLPDDEVAHL KKMAVEQALE TIRNRIDQFG VSEPVIHIQG RRQILVQLPG
VTDPQRAKDL IGKTALLEFR LVDEENDVAK AVRGQVPPGS ELLYEVSTDP DTGRTIKSPL
LIKRGTPLTG ADLSDARVQI DAQYNEPYVS ITFNRKGANI FAKITEENLK KRLAIVLDNH
IHSAPVIQDR ITGGAARITG SFSMDEAHDL AIVLRAGALP APVKILEERT VGPSLGKESI
DKGLMSMYIG GLIVVLFMAT YYRKAGLIAD VALVFNILLI AAGLAALGAT LTLPGIAGII
LTIGMAVDAN VIIFERIREE IRTGKPPRAS VAAGFDRAAL TILDANITTL IAAVVLFQFG
TGPVKGFAVT LSLGVMASLF TALVVSRQIF DLILTRRKVT HLSI