| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2419 |
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| Symbol | |
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| ID | 5695267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2918652 |
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| End bp | 2921030 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265025 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001530300 |
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| Protein GI | 158522430 |
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| COG category | [N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0484292 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATCCC CGGCCACATC CGCCGGCTTC TGGCAGGCCG GGGCCACGCT GCTCCTTCTT
GCCGCAGCAG GCGTAGTCCT TTACTCAAAC TCCCTGACGG CCCCGTTTGT ATTTGACGAT
CTTCCCAACA TTTTTGAAAA CCCCCACATC CGTATAACCC GTCTGTCCTT CCCCGATCTT
GCCGACGCGG CCACCGTCGG AACCCGGCGG CCGGTGGCCA GCCTCACCTT TGCGCTGAAC
TATTATGTTC ACGGCTATAA CGTGGCCGGA TACCACGTGG TCAACATCGC CATTCACATT
CTGACAGGTT TTCTGATGTT TCTGGTGGTG CGTCAGACAC TGGGCCTTAC GGGCAATGAA
AAAAAAGAGC TGATCGCTGC CCTGGCAGCC CTGGTCTGGC TCGTCAACCC GGTCCATACC
CAGGCGGTGA CCTATATCGT CCAGCGCATG ACCGCCCTGG CCACCCTCTT TTTTCTTTTC
GCCCTCTACC TTTATATAAA GGGCCGGCTC CGGCAGCGGA CCGGCCGTCC CCTTGGCATT
CTCTTTTTTG CCCTCTGCGG CCTGTCCGGC ATTCTGGCCG TGCTCTCCAA GCAGATCGCC
GCCACCCTGC CCTTTTTTGT TCTGGTCTAT GAATGGTATT TTTTCCAGGA CCTGGACCGG
GCATGGGTTA AACAACAGGC AAAGTGGATC GGCGGAGCAG TGGTCATCAT TGGCGCACTT
GCGGCAATAT ACCTGGGCGC CTCCCCGATA GAAAAAATCA TGGCCATGTA CGACTCCCAG
GGCTTTACCA TGGGCCAGCG CCTCCTTACC GAACCCAGGG TGATTTTTCT CTACCTTTCG
CTGCTTTTTT TTCCCCACCC CGGGCGGCTC AACCTGGATT ATGACTTTCC CATCTCTGTC
TCCCTGGTCG ATCCGGTCAC CACCCTGGTC TCCATACTGG GCCTGATCGG TCTGGTGGCG
GCCGCTTTTG TCACGGCAAA AAGAAAGCGG CTGGTCTCCT TTGCCATTGT CTGGTTTCTC
GGCAACCTGG CCATTGAGTC CTCTTTTTTA GGCCTTGCCC TGGTGTTTGA ACACCGCACC
TACCTGCCCT CTGTCTTTGT AGTTGCGGCC CTGGCCTGGG CTGCTGTTAC ATATATCCGG
CCCCGGCCCC TGGCCATTGG TTTTCTCTGC GCTTTAACCC TCCTCTGGGG ATTCTGGACA
TACCAGCGTA ACGCCATCTG GGCAGACGAA GTAGCCCTGT GGCAGGATGT GACAGAAAAA
TCCCCGAACC TGGCCCGGCC CTGGAACAAT CTGGGCCTGG CATTGAGAAC GGCCGGGCTT
TCAGAAGAGG CACTGACGGC TTTCAATACA GCCCTCACCC TGGATCCACA CTATACGGAG
GCCCGCAACA ACCTGGGTGT GCTTTATCAG CATACCGGAA AGACACAGAA GGCGGTGCAG
TGTTTCGAGA ACGTGATAAA ACTGAACCCC GGGTTTGCCC CCGGTTACCT GAACATGGGA
AAGGTGCTGC TGGACATGGA CCGGCCCGAT CAGGCAGAGC CGTTTTTTCA AAAAGCCCTG
ACCCTGGCCC CTGAAACAGA GGCTGTTCAC TACAACCTGG GCCTGGTCCG CTTCCGGCAG
ACGGACCTGG CCGCTGCATG GCGCCATGTG AACAGTGCCC TTGACCTCAA CCCCGGCTAT
GACCTGGCCC TCAACCTTGC GGGCTCCCTG CACATGGCCT GTGGTAACAC CGGTCAGGCT
GTTGCGCTTT ACCGCAAAGC ACTTGCGATA ACCCCCCTTT CAGCGGAGAC ATTCAACAAC
CTGGGCATTG CCCTTCACCG GCAGGGTGAC AGCGGGCAGG CCATGACCTT TTTCCGCAGG
GCCCTTGAAC GCAACCCCGG TTTTGCCGAC GCGGCGAGCA ACCTGGAAAA AATTGAGGCC
GCCCTTGAGA CCTACGGCCT GGCAATCCGC GCCCTTGAGC AGGCAGTGGC CGCCTCCCCC
GGCGACCCGG CCCGCCTTTT TCAACTGGGC CGGCTGTACG CGGCAGTGGG CATGCAGGAC
AAAGCCCTGG CCGCCTATGA AAAAACCATT GTCTTAAAAC CGGATGACGC TGCCTGTCTC
AACGCCCTGG GAACGCTCTA TGCCGATATC TGCGACATAC AAAAGGCGAT CACCTGTTTT
GAAAAACTGG CCCGGCTCGC GCCGGACAAT GCCGTGGTCT ATTACAACCT GGCCTGCCTG
TACGCCCGGC AACACCAGGT GGCGCCGGCC CTGACAAATC TTGAAAACGC CCTTGCCGCG
GGATATGACG ATATGGACCG AATCCGCACC GACAAGGACC TGGACAACAT CCGTCACACC
GAGGCCTTTG ACCGCCTGAT CCAGAAAAGC GCCGATTGA
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| Protein sequence | MRSPATSAGF WQAGATLLLL AAAGVVLYSN SLTAPFVFDD LPNIFENPHI RITRLSFPDL
ADAATVGTRR PVASLTFALN YYVHGYNVAG YHVVNIAIHI LTGFLMFLVV RQTLGLTGNE
KKELIAALAA LVWLVNPVHT QAVTYIVQRM TALATLFFLF ALYLYIKGRL RQRTGRPLGI
LFFALCGLSG ILAVLSKQIA ATLPFFVLVY EWYFFQDLDR AWVKQQAKWI GGAVVIIGAL
AAIYLGASPI EKIMAMYDSQ GFTMGQRLLT EPRVIFLYLS LLFFPHPGRL NLDYDFPISV
SLVDPVTTLV SILGLIGLVA AAFVTAKRKR LVSFAIVWFL GNLAIESSFL GLALVFEHRT
YLPSVFVVAA LAWAAVTYIR PRPLAIGFLC ALTLLWGFWT YQRNAIWADE VALWQDVTEK
SPNLARPWNN LGLALRTAGL SEEALTAFNT ALTLDPHYTE ARNNLGVLYQ HTGKTQKAVQ
CFENVIKLNP GFAPGYLNMG KVLLDMDRPD QAEPFFQKAL TLAPETEAVH YNLGLVRFRQ
TDLAAAWRHV NSALDLNPGY DLALNLAGSL HMACGNTGQA VALYRKALAI TPLSAETFNN
LGIALHRQGD SGQAMTFFRR ALERNPGFAD AASNLEKIEA ALETYGLAIR ALEQAVAASP
GDPARLFQLG RLYAAVGMQD KALAAYEKTI VLKPDDAACL NALGTLYADI CDIQKAITCF
EKLARLAPDN AVVYYNLACL YARQHQVAPA LTNLENALAA GYDDMDRIRT DKDLDNIRHT
EAFDRLIQKS AD
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