| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2413 |
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| Symbol | |
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| ID | 5695261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2906556 |
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| End bp | 2908337 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641265019 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001530294 |
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| Protein GI | 158522424 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACGAAAC CCAGCCGGAC GGACGTGGTC ATGAAGAAGC ATGGTAGGGA AATTTTTATC
AGCCTGCTGC TGGCGATGGC CGTGCTTGTT GTATACGCAC AGGTCCGAAA CTTCGAGCTT
GTAAGGGATG ACGACTACAC GGTCATGTCT TACGCGGACG TCCATACGGC CCATGGGTTT
GATATCTCGG CCGCGTTCAC GGGCGGGCCT TCCTGTTTCC CGTACCGGGT GCCGCTGGTC
ATGTTGTCTC ACATGCTGGA CCTTGTGCTT TTCGGCCAAG CCTTTGGCCT GCACCACATG
GTCAACGTTT TTATCCACAT CATCAATACG TTGTTTCTTT TTTACGCGTT TCGGTTCGCC
ACCGGCGATA CATGGAAAAG CGCCGGCCTG GCGGCGCTTT TCGCCGTTCA TCCCCTGAAC
GTGGAACCGG TGGTATGGCT GCCCTGCCGT GTCACCCTTT TGAGCGGCTT CTTTTTTATC
CTGACCCTTT TGTGTTATTT CCGGTATGCG AAAAGGCCGA CGAAGGCCGG GTATGCCCTG
GTTCTCCTGT TTTATGTGGC CGGTCTCTTG GCAAAACCCG AAGTCATTTA TCTGCCTTTT
GTTCTACTGC TGATGGACTA CTGGCCGCTT GGCCGGTGGC GCGGGACAGC CCCTGCATAT
AATCCGTGTG CTCTTCCAGA GCATGCGGGC CTGTCTGTTA CCGCTTTGCT GAAGGAAAAA
ACGCCTCTGT TTCTTGTCGC ACTGGCGGGA GCTGGCCTGG CGACGTATCT GTACATCAAA
ACACCTGTCC GCGGTATGAT TCCAAAAGAC TCGATTCTTC CTCTTTTCAC GGATGTCTTG
GCCGGCGTTC CGTTATCTTA TCTCGTTTAT TTGTTGAAGA TTCTTTTTCC TTTTAATCTG
TCTGTTTTCA GCGGGCTTGA CTATGTGCCA CCGGGGGCAT GGGAAATCGC GGGCGCAGCG
GTTTTATTTT TTCTGATAAC GGGCTTGGTA TTCTATACCG GCCGCAGGCG GCCTTACATG
ATTATCGGCT TGCTCTGGTT TCTTCTTACC ATGGCGCTGC CGGTCGTTCT GAGCGGCCTG
TTTCGGCATT CGCTGATCCA CCGATATACC TATCTACCGG GAATCGGCAT ACTTGTCATT
CTGGTGTGGG GCGGGCATGA CATCTTTAAA CATAACCGAC ACCTTTTATC TTTTTTTGTG
GCGACTTTAC TCGTTCTTGT TCTGGGGTCT ATGACACTTT CATGGCGGCA GACCGCAATC
TGGAAAAACA CCGCCACCCT TTATGAAAGT CTTCTCAAAA GCGGCCACCG CCCGGCGGAA
GATGTTTATA CCGACCTGGG GAACATTATG CTGGGAAGGG GAGCGACGGA CCAGGCGATT
GTTTATTATC AAAAGGCCCT TGCGCATTCA CCGGCGGACC CCCGCCTTTA CCATTGCCTG
GGTCTTGCCC ATGCGCGAAA AGGGGCCGTG TCGGCCGCGC TGGCCGCCTA TCACCGGGCA
CTGGCCCTGA ATCCGGATTT TGCCCTGGCC CATAACAACC TGGCCAATCT GCTGGCCGAT
ACGGGACAAA TCGACGAGGC CATTGATCAC TACAGGGCGG CCCTGGCGGC AGACCCCGGG
CAACCGGAAT TTTATAATAA TTTAGCCACG ACCCTGGCGC AAAGCGGGCG GATACCGGAA
GCCATTCAGC ACCTGGAAAA AGCGCTTGCC ATCGACCCGG AATATCAGAC CGCCAGAAAA
AACCTGGCAC GGCTTCGTGT CATGGAATCG TCCGGCGAAT AA
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| Protein sequence | MTKPSRTDVV MKKHGREIFI SLLLAMAVLV VYAQVRNFEL VRDDDYTVMS YADVHTAHGF
DISAAFTGGP SCFPYRVPLV MLSHMLDLVL FGQAFGLHHM VNVFIHIINT LFLFYAFRFA
TGDTWKSAGL AALFAVHPLN VEPVVWLPCR VTLLSGFFFI LTLLCYFRYA KRPTKAGYAL
VLLFYVAGLL AKPEVIYLPF VLLLMDYWPL GRWRGTAPAY NPCALPEHAG LSVTALLKEK
TPLFLVALAG AGLATYLYIK TPVRGMIPKD SILPLFTDVL AGVPLSYLVY LLKILFPFNL
SVFSGLDYVP PGAWEIAGAA VLFFLITGLV FYTGRRRPYM IIGLLWFLLT MALPVVLSGL
FRHSLIHRYT YLPGIGILVI LVWGGHDIFK HNRHLLSFFV ATLLVLVLGS MTLSWRQTAI
WKNTATLYES LLKSGHRPAE DVYTDLGNIM LGRGATDQAI VYYQKALAHS PADPRLYHCL
GLAHARKGAV SAALAAYHRA LALNPDFALA HNNLANLLAD TGQIDEAIDH YRAALAADPG
QPEFYNNLAT TLAQSGRIPE AIQHLEKALA IDPEYQTARK NLARLRVMES SGE
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