| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2410 |
|---|
| Symbol | |
|---|
| ID | 5695258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 2902320 |
|---|
| End bp | 2904266 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641265016 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001530291 |
|---|
| Protein GI | 158522421 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGGC GGTTCATCTT ATCCAGGTGG ATACAGGCGG GAATACTGGC GGGAATGGTG
TTGGTGGCCT ATCTTCCATC CACCGACCAC TCCTTTATCT GGGACGACGA CTATTATATC
ACTCACAACA TGACCCTTGC GGGCTTTTCC GGGTTGAAAC GCATATGGCT TGAGCCCGGC
GCCACGCCGC AATACTATCC TCTGGTCTTT ACCAGTTTCT GGCTCGAGTA TCATCTGTTC
GGTCTTAACC CGGCAGTGTT TCATTTCACC AACATCCTTC TGCACGCCGC AAACGCCGTG
CTGGTATGGC TGATCCTGGC CCGACTGCGC CTGCCCTGGG CATGGCCGGC CGCTGCCCTG
TTTGCGCTTC ACCCGGTCAA CGTGGAGTCC GTGGCATGGA TCAGCGAACG CAAGAATGTA
CTTTCCGGAA TGTTTGTTCT GCTCTCCCTG CTGTTTTTAA TCCGCGCATC TCTTTCCGGA
ACCGGCGGGA ACCAGTACCC CGAAACGGCT TCAACAAACA GGCGGCTCTC CTACATGACC
TCCTTTTTGT TTTTTATACC GGCCCTGTTA AGCAAAACCG TCACCTGCAT GATGCCGGCA
GCGTTCCTGA TGCTGGTATG GTGGAAAAAC CCTCAGGGGG GGGGCAGAAA AGCAGTGGCA
ACGCTTCCCT TTTTCCTTGT CGGGGCCGCG GCCGCGCTGC ACACCGTCAT CATGGAAAAA
AGCCACGTAG GGGCCTACGG GATGGAATGG GCTTTCAGCA CAATCGACCG TGTGCTGATC
GCCGGGCGGG CCCTCTGGTT TTACGCATAC AAACTGGTCT GGCCGGCAAA CCTGGTGTTC
ATCTATCCCC GGTGGGACAT CAACGCCACT GTATGGTGGC AGTATCTGTT TCCCGTCGGC
GCGCTTGGGG CCTTTATTCT ACTCTGGGTG ACAAGAGGCC GGCTGGGCAG GGGGGCTTTG
ACCGGTGTGG CGATTTTTGC GACAGCGCTT TTTCCCGCCC TGGGATTTAT CAATTACTAT
CCCATGCGAT ATTCCTTTGT GGCGGACCAT TTTCAGTACA TGGCCGGCAT CGCCCTGATC
GCCCTGATAA CGGCTGCGGC CCATCGCCTG TTTCATGGCA TCCATCGATT TCCCGCTAAA
ACAGCCTGCA TTCTGTTTTC CGTCCTGTTG TTGCTGCTTG GCACGCGTAC CTTGCAGGAA
CAGAATAAAT ATGAGAACCT CCATACTCTG TGGCGGGATA CGCTGCGAAA GGACCCCTTG
TGCTGGATGG CCCACAACAA CGTCGGGGCA CTGCTGTCTA AAATCGGCAA TTATGAAAAG
GCGATTGCCC ACTTCAACAA ATCGCTCAGC ATTTATCCGA CAAACGTAAT GGCCCATTTA
AACATCAAGG GTGTGTCTAA AAAACTGACC GGTCAAACAA CAGGGCCGCT GCTTTACGCT
GGCGAACCCG GACGGCCCCG ACTGATGGCA TGGGATAACC GGCTGGCGAC TGTCATGACA
CGATTGGGAT GGGATAAAGC GGCGAACCAT TATTATCAAA AAGTCATGGC CGTGGATCCC
CGGAATGCCG AGGCCCACTA CGGAACAGGC CAACTGCTGG AGCGACAGGG AAAAATCGAC
GCTGCGATTA CCGCCTATGA AACAACGCTG GATATCGACC CCCTGTACAC GGACGTTTAC
CAAAGACTGG GAAAAATCCA TCTGACGCGC AACGAATACG AGAAAGCGAT AGACCGGTTT
TTCATGCTGT TAAAAATCGA TCCGTTCCGG GCAGAGGCAT TTGAGCAACT GGGGCTCTCC
TATTATCACA CAGGCGACTT AGAAAACGCA ATCAGAGCCT ACCGACTGGC CCTCAATATT
CAACCCCATA ACCGGGCTCT CCAAATGACG CTTTCGCGAA TACTGACACA GCCTGAACCG
GTGGAGTCCC TGCCACCACG GCCATGA
|
|---|
| Protein sequence | MIRRFILSRW IQAGILAGMV LVAYLPSTDH SFIWDDDYYI THNMTLAGFS GLKRIWLEPG
ATPQYYPLVF TSFWLEYHLF GLNPAVFHFT NILLHAANAV LVWLILARLR LPWAWPAAAL
FALHPVNVES VAWISERKNV LSGMFVLLSL LFLIRASLSG TGGNQYPETA STNRRLSYMT
SFLFFIPALL SKTVTCMMPA AFLMLVWWKN PQGGGRKAVA TLPFFLVGAA AALHTVIMEK
SHVGAYGMEW AFSTIDRVLI AGRALWFYAY KLVWPANLVF IYPRWDINAT VWWQYLFPVG
ALGAFILLWV TRGRLGRGAL TGVAIFATAL FPALGFINYY PMRYSFVADH FQYMAGIALI
ALITAAAHRL FHGIHRFPAK TACILFSVLL LLLGTRTLQE QNKYENLHTL WRDTLRKDPL
CWMAHNNVGA LLSKIGNYEK AIAHFNKSLS IYPTNVMAHL NIKGVSKKLT GQTTGPLLYA
GEPGRPRLMA WDNRLATVMT RLGWDKAANH YYQKVMAVDP RNAEAHYGTG QLLERQGKID
AAITAYETTL DIDPLYTDVY QRLGKIHLTR NEYEKAIDRF FMLLKIDPFR AEAFEQLGLS
YYHTGDLENA IRAYRLALNI QPHNRALQMT LSRILTQPEP VESLPPRP
|
|---|
| |