Gene Dole_2348 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2348 
Symbol 
ID5695196 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2830942 
End bp2833110 
Gene Length2169 bp 
Protein Length722 aa 
Translation table11 
GC content61% 
IMG OID641264954 
ProductRecD/TraA family helicase 
Protein accessionYP_001530229 
Protein GI158522359 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACCA CATTGACAGG CCAGCTGGAG CGCATCACCT ACACCAGCGA GGAGAGCGGG 
TTTACCGTGG CCCGGGTCAG GGTGCGGGGC CAACAAGACC CGGTTACCGT GGTGGGGCCG
TTGCTGGGGG TGTCACCGGG TGAGGTCCTT GAAATGCAGG GCCAGTGGAC CACCCACCCC
TCCTTTGGTG ACCAGTTCAA GGTGGAATCT TACAAAGCCC GGGCCCCGGT CACGGTGGAG
GGCATTCAGA AATACCTTGC CTCAGGCATG ATCAAGGGCA TCGGCCCGGT CACGGCCGAG
CGCATCACAA AAAAGTTCGG TAAAAAGACC CTTCAGGTCC TGGAGACCGA CATCAGCCGC
CTGGCCAAAG TGCCGGGCAT CGGCAAGAAA CGCATCACCA TGATTCAGGC GTCCTGGGAG
GCCCACAAAG AAGTCCGGGA CGTGATGGTC TTTTTGCAGA GCCAGGGCAT CGGCTCCGGC
TACGCCATGC GCATTTTTCA GACGTATGGC ACCGGCACCA TGGACGTGGT GACGAACAAC
CCCTACCGGC TGGCCGCTGA CGTGGCCGGC ATCGGGTTTC TCATCGCCGA CCGCATCGCT
GAAAAACTGG GGTTTGCCAA AAATTCACCG GTGCGGGTGC GGGCAGGGGT GCTGCATGTG
CTTTCCAGCC TGGGCGATGA CGGCCATGTC TATTACCCCT TTGAGCCGCT GGTCCGAAAG
AGCATGGAGA TCCTGGGCGT GGACCGGGCA CTGGTGGTGG CTGCCGTTGC CGACGAGGCA
ACGGAAAAAA ATATCGTGGT CGAGGAGTTG AAGGATGACG ACGGCGAGGA CGGCAAGGGG
GTTTACCTGG CCGGCTATTT TCTGTGCGAA ACCGGCATCG CCCGCCGGAT AAAAGAGCAG
GTGGCCACCG GCAAGGTGAT TCGGGAGATC GACACGGCCA GGGCCGTGGA CTGGGTGCAG
AAAAAGCTTT CCATCACCCT GGCCGAGAAG CAGGCCGAGG CGGTGCGCAC CGCGGCCAAA
AGCAAGCTCA TGGTGATCAC CGGCGGGCCG GGTACGGGCA AGACCACCAT CGTAAAGTCC
GTGCTGCACA TCATCAACGC CCTGGGGGCC GTGGTGCTGC TGGCCGCGCC CACGGGCCGG
GCCGCCAAGA AACTCAAGGA GGCCACCGGC CACGAGGCCC GCACCATTCA CCGCCTGCTG
GAGTTTTCCA TGGCCAAGGG CGGGTTCCAG CGCCACGACA GCCGGCCCCT GGAGTGCGAT
CTTTTGGTGA TCGACGAGGC CTCCATGATC GACACGGTGC TGATGTACCA CCTGCTCAAG
GCGGTGCCGC CCCATGCCGT GCTGATCCTT GTGGGGGACG TGAACCAGTT GCCGTCGGTG
GGGCCGGGCA ACGTGTTAAA CGATATTATC TCCTCGGGCG TGGCGCCGGT GGTGACGTTA
AACGAGATTT TCCGCCAGGC CAGGCAGAGC CGGATCGTGG TCAACGCCCA TCTGATCAAC
CAGGGACAAC TGCCCCATAT TCAGAACGAC GATACAGCCG GCGACTTTTT CTTTGTGGAC
CAGGAAGACC CGGACACGGT TGCCGACACC ATTGTCGACC TGGTCACCCG CCGCATTCCG
GCAAAGTTTG ACCTTGATCC CTTTGACGAC ATTCAGGTGC TGACCCCCAT GCACAAGGGA
ACGGTGGGCG CCATCAACCT GAATAACCGG CTGCAGAAGG CGTTAAACCC GGAGTCAAAG
GGCATTGTCC GGGGCGAGGC CACCTTCGGC CTGTCGGACA AGGTGATGCA GATTCGCAAC
AACTATGACA AGGAAGTGTT CAACGGCGAC ATCGGCCGCA TTGTCCGTAT CAATCAGGAG
GCCCGGGTGC TGGGCGTTCT GTTTGACGGG CGGGAGGTGG CTTACGATTT TTCAGAGTTA
GACGAGCTGG TGCTGGCCTA TGCCATTTCC GTGCACAAGT CCCAGGGATC GGAGTATCCG
GCGGTGGTGA TGCCTGTTCT GACCCAGCAC TACATCCTGT TGCAGCGCAA CCTGGTGTAC
ACGGCCGTGA CCCGGGGCCG CCGCCTGGTG GTGATGGTGG GCACCAAAAA GGCCCTGGCC
ATCAGCGTGA ACAACAACCG GCCCAACCTG CGCTACACGC GGCTGCGCCA GCGGCTGGCC
GGTGCATAA
 
Protein sequence
METTLTGQLE RITYTSEESG FTVARVRVRG QQDPVTVVGP LLGVSPGEVL EMQGQWTTHP 
SFGDQFKVES YKARAPVTVE GIQKYLASGM IKGIGPVTAE RITKKFGKKT LQVLETDISR
LAKVPGIGKK RITMIQASWE AHKEVRDVMV FLQSQGIGSG YAMRIFQTYG TGTMDVVTNN
PYRLAADVAG IGFLIADRIA EKLGFAKNSP VRVRAGVLHV LSSLGDDGHV YYPFEPLVRK
SMEILGVDRA LVVAAVADEA TEKNIVVEEL KDDDGEDGKG VYLAGYFLCE TGIARRIKEQ
VATGKVIREI DTARAVDWVQ KKLSITLAEK QAEAVRTAAK SKLMVITGGP GTGKTTIVKS
VLHIINALGA VVLLAAPTGR AAKKLKEATG HEARTIHRLL EFSMAKGGFQ RHDSRPLECD
LLVIDEASMI DTVLMYHLLK AVPPHAVLIL VGDVNQLPSV GPGNVLNDII SSGVAPVVTL
NEIFRQARQS RIVVNAHLIN QGQLPHIQND DTAGDFFFVD QEDPDTVADT IVDLVTRRIP
AKFDLDPFDD IQVLTPMHKG TVGAINLNNR LQKALNPESK GIVRGEATFG LSDKVMQIRN
NYDKEVFNGD IGRIVRINQE ARVLGVLFDG REVAYDFSEL DELVLAYAIS VHKSQGSEYP
AVVMPVLTQH YILLQRNLVY TAVTRGRRLV VMVGTKKALA ISVNNNRPNL RYTRLRQRLA
GA