| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2246 |
|---|
| Symbol | |
|---|
| ID | 5695094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 2720233 |
|---|
| End bp | 2722527 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641264852 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001530127 |
|---|
| Protein GI | 158522257 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00114324 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCA TCTTTCCTAA AGACGATCAC GACCAGACTT TAAGAATCAA ACGCTTTCTC
ATGGCCTTTG GCGCATATGT TATATGGAGC GCTATCTGCT ACGTTGGTTA TTTTTTAGGA
TTAACCAAGG TGCCGTTGTA CATCCTGTCT GCCGGTGTTG CAGGCAGCTT TATCGTAAAT
ATTCTATTAT ATTTAATCTT CAGAACCGGA TTAAATAAAA AGTTCCAAGA CAAGAGCCTG
ACCCTTATCC AGATGGTGAT AGCCACCTTC TGGATCATGG TGGTTGTGTA TTACGCCTAT
GAGGCCAGAA GCGCGGTCCT TCTTGTTTAT ATGGTTGTGC TTGTGTTCGG ACTTTTCAGG
TTGAGAATCC GGCAATTTCT TTTTCTGTCG ATTTTTGCCC TGGTTAATTT TTCCGCGGTT
ATTTTTGTAC TTTATAAATT ACAGCCCGGA TACATCAATG TTAGAGTGGA CATATTCAAC
ATTGTGGTCC TGGCGTTTAT TCTTCCATGG TTTTCCGTGG TCGGCGGATA CATCACCAAC
CTCAGGGCCA GCATTTCCAG GGCCTTTACA ACCATTGAGC TGCTGACGAA CAACATCGAA
GATATCGTTT TCGTTGTGGA TTTGGATCTG AATTATACCT ATGTCAGTCC TTCTGTTAAA
ATTCTGAGGG GATACGAACC GGAAGCGGTG ATGAAACAGG CGCTGTCCGA TTCCTTTGCC
CCTTCCTCCC TGGATTTGGC CATGAGGACG CTATCCGAAG CCGTGGCGCT GGGAAAATCA
GGCGGTACAG AATACAACAA ATCCCGGACG CTCCAGTTGG AAATCAAGAA AAAAGACGGG
ACTACCGTGT GGACGGAAAC AAAATTTTCC TTTGTCCGGG ATAAAAACAA ACAAACGGTT
GGTATTCTGG GGGTAAGCCG GGATATTACC GAACGCAGGC TCGCCGAAGA AAAGATTCGA
TACCTGGCCA CGCACGACAA CCTGACGGAA CTCCCCAACC GCACCCTGTT CGGTCAGATG
TTAGGTCGGG CAATCAAGTT TGCTCAGCGT TATCAGCGGC AGTTTGCCGT TTTATTCATC
GATCTGGACC GATTCAAGAT TATTAATGAT ACCATGGGGC ACGATGCCGG TGACCAGCTG
TTGAAAGAGA TCGCCAGCAG GTTTAGACAA TCGCTGCGGG CAGTTGATGT TGTTGGTCGG
CTAAACGAAA AAGACAGTGT TGTCGGCCGT CTGGGGGGAG ACGAATTTGT TGTACTGATC
GAGGAAGTGA CGAACCTGAG CCAGGTGGCA ACCGTCGCCC AAAAAATACT GAACACCGCC
ATTAAACCGA TGGTTCTTCT GGGGGAAGAG TGTCGGGTAA CAGCCAGCAT CGGCATCAGC
GTATACCCGG ATGATGGAGA GGACGAACGC ACCCTGATGA AAAAAGCGGA CATGGCCATG
TACTTTGCCA AAGAAGAAGG CAAGAATAAC TTCCAGTTTT ATTCTCAAAA CACACATTCA
CCGGCATTTG AACGTTTTTT CGTCGAAGCG GAATTGCGTC ATGCGCTGGA GCGCAATGAA
CTGTATTTAG ACTATCAGGC CAAATTGGAT TTCAAAACCG GCGCCATCAC GGGTTCTGAA
GCCCTGCTGC GCTGGCGGAA CCCCGGACTG GGTTTAGTGG CACCAACGCA ATTCCTTCCG
GTAGCCGAAG AAACCGGATT GATCGTACCC ATCGGCAGAT GGGTAATGAA GACCGCCTGC
GCCCAGAATG TCGCCTGGCA GCGTCAGGGG CTGCCACCGG TCACCGTGGC AGTCAACTTA
TCGCTTCGTC AACTCATGGA CGATAAACTC ATAGAAGATA TCAGGACCGC GTTGGAAGCT
TCCGGCATGG CGCCCAACCT TCTGGAGCTG GAAATCACTG AGAGCATTGT AATGCATAAG
CCCGCGCCCC TGATTGAATT GCTGGCCAGG ATAAAAAGCC TGGGTGTACG GATTGCGCTT
GACGATTTCG GCACCGGCTA CTCTTCCCTC GCCCAGATAA AACACCTTCC AGTCGACACC
CTCAAAGTGG ACCGATCGTT CATTCGCAAC CTTCAGCAAA ACCCGGACGA CAGAGAGATT
ATCGAAGCGG TCATCGCCAT GGGCAGGGCG CTGAGTCTTA ATGTTATTGC CGAAGGCGTG
GAGACGCTGG CTCAGGACAC CTATCTGCGA GAACATATCT GCGATGAGAT GCAGGGGTTT
TATTTCAGTA AGCCGGTTGC GCCTGATCAG TTTGCCGATC TGTTGAGTAA GCATACGACA
CCATCGTCAA CATGA
|
|---|
| Protein sequence | MFSIFPKDDH DQTLRIKRFL MAFGAYVIWS AICYVGYFLG LTKVPLYILS AGVAGSFIVN
ILLYLIFRTG LNKKFQDKSL TLIQMVIATF WIMVVVYYAY EARSAVLLVY MVVLVFGLFR
LRIRQFLFLS IFALVNFSAV IFVLYKLQPG YINVRVDIFN IVVLAFILPW FSVVGGYITN
LRASISRAFT TIELLTNNIE DIVFVVDLDL NYTYVSPSVK ILRGYEPEAV MKQALSDSFA
PSSLDLAMRT LSEAVALGKS GGTEYNKSRT LQLEIKKKDG TTVWTETKFS FVRDKNKQTV
GILGVSRDIT ERRLAEEKIR YLATHDNLTE LPNRTLFGQM LGRAIKFAQR YQRQFAVLFI
DLDRFKIIND TMGHDAGDQL LKEIASRFRQ SLRAVDVVGR LNEKDSVVGR LGGDEFVVLI
EEVTNLSQVA TVAQKILNTA IKPMVLLGEE CRVTASIGIS VYPDDGEDER TLMKKADMAM
YFAKEEGKNN FQFYSQNTHS PAFERFFVEA ELRHALERNE LYLDYQAKLD FKTGAITGSE
ALLRWRNPGL GLVAPTQFLP VAEETGLIVP IGRWVMKTAC AQNVAWQRQG LPPVTVAVNL
SLRQLMDDKL IEDIRTALEA SGMAPNLLEL EITESIVMHK PAPLIELLAR IKSLGVRIAL
DDFGTGYSSL AQIKHLPVDT LKVDRSFIRN LQQNPDDREI IEAVIAMGRA LSLNVIAEGV
ETLAQDTYLR EHICDEMQGF YFSKPVAPDQ FADLLSKHTT PSST
|
|---|
| |