| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2239 |
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| Symbol | |
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| ID | 5695087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2712243 |
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| End bp | 2715383 |
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| Gene Length | 3141 bp |
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| Protein Length | 1046 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641264845 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001530120 |
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| Protein GI | 158522250 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCTG CCGGATACAC CGAAGACGCC CTGATCGAAC AGCCGGCCAT CGCCCTGTTT
AAAGAACTGG GATGGGAAAC GGTCAATGCC TATCACGAGT TTGAACAGGG CGGGAGCACG
CTGGGCCGGG AGACAAAAGG CGAGGTCATC CTTGCTCTCC GGCTGCGGAG TGCCCTGCTG
CGCCTTAACC CGGACGCGCC GACCGAGGCC ATTGACCAGA CCATTGAAGA CCTGACCCGG
GACCGTTCGC GCATGAGCCC GGCGGCCGCC AACCGGGAGG TCTATCATCT GCTTAAACAC
GGCGTGCGCG TTCCCGTGCC CGACCCCGAA GGCGACGGTG AAACGGTAGA AGTGGTGCGA
ATCATCGACT GGGAGAACCC GGGCAAAAAC GACTTTCTGC TCTGCTCGCA GTTCTGGGTG
ACCGGCGAGA TGTATACCCG CCGGGCCGAC CTGGTGGGTT TTGTCAACGG CCTGCCCTTG
CTGTTTATCG AACTTAAAGC AACACACCGC CGCCTGGAAA CCGCCTTTAC CGGCAACCTG
AACGATTATA AAGATACCAT TCCTCAGATG TTCTGGCCGA ATGGCCTGGT CATACTTTCC
AACGGCAGCC AGAGCCGGGT GGGCAGTATC ACCGCCGGAT GGGAACACTT TTCCGAGTGG
AAGAAAATCG GCAGCGAGGA TGAGGCGGGC AAAATCTCGC TGGAGACCAT GCTGCGCGGC
GTGTGCGAAC CGGCCAGGCT GCTGGACCTG GTAGAGAACT TCACCCTGTT TCAGGAAGCG
CCCGGCGGGC TGATCAAGCT GACGGCCAAG AATCATCAGT ACCTTGGGGT CAACAACGCG
CTGGCCGCCC TGACCGACAT TCGGCAACGG GAAGGCAAAC TGGGCGTGTT CTGGCATACC
CAGGGCAGCG GCAAGAGCGT TTCCATGATC TTTTTTGCCC AGAAGGTGAT GCGCAAGCAG
CCGGGCAACT GGACCTTTGT GATTGTCACC GACCGCCAGG AACTGGACGG ACAGATTTAC
AAAAATTTCG CTTCGGCCGG GGTTGTCACC GAAGGCCGCG CCCAGGCCGA AAGCAGCAAG
CACCTGCGGC AGTTGCTGGG TGAGGATCAC CGCTATATTT TTACCCTGAT CCACAAATTC
CGTGCGCCGG AGATGATCTC CACCCGCGAC GACATCATCG TCATCACTGA CGAAGCCCAC
CGCAGCCAGT ATGATACTCT GGCGCTGAAC ATGCGCACGG CTTTGCCGAA CGCGGCTTTT
CTGGCCTTTA CCGGCACGCC GCTGATCGTA GGCGAGGAGA AGACGCGGCA GGTATTCGGT
GATTACATCA GTGTTTATGA TTTCCGTCAG TCGGTGATTG ACGGCGCCAC AGTGCCCCTC
TATTACGAAA ACCGCATTCC TGAACTGCAA CTGGTCAACG ACAACCTCAA CGAGGAGATG
GCGCGCCTGC TGGAAGAGGC GGAACTGGAT GAGGCCCAGG AGAAAAAACT GGAACGGGAA
TTTTCCCGGG AGTACCACCT GATCACCCGC GATGACCGGC TGGAGGCTGT GGCCAAGGAC
ATTGTCGCGC ATTTCACCGG TCGGGGCTTT TCCGGCAAGG GTATGGTGAT CTGCATTGAC
AAGGCCACGG CCATCCGCAT GTACGATAAA GTGAAAAAAC ACTGGGCGGC AAAGATCGCC
ACCCTGGAGG CGGAAAAGGA TACGGCGCCG ATTGAAGCCC TGCCTGAAAC CGAAGATCGC
CTTGCCTGGA TGAAAGAGAC CGATATGGCA GTGGTGGTTT CGCAGGGGCA GAACGAAATC
GCCGAAATGG CGAACAAGGG GCTGGACATC CGCCCGCACC GCAAGCGCGT GGTCGAAGAA
GACCTGGATA CCAAGTTCAA AAAACCGGAC GATCCGTTCC GGCTGGTATT TGTCTGCGCC
ATGTGGATGA CCGGCTTTGA CGTGCCAAGC TGTTCCACCC TCTATCTTGA CAAGCCCATG
CGCAATCACA CGCTGATGCA GACCATTGCC CGAGCCAACC GGGTCTATCC CGGCAAGGTC
AGCGGCCTGA TCGTGGATTA TGCCGGGGTG TTCCGAAACC TTGAAAAGGC GCTGGCCATT
TATGGCGCCG GCGAGGGCGG CGACAAGCCG ATTGAAGATA AGGCCGCGCT GGTGGCGGCG
CTGCGGCAGG TATTGGAAGA AACCGGGGCC TTGTGTCAGG AACAGGGGGT GGGTCTTGCG
GCCATTCGAT CTGCTGATGG GTTTGCCCGC GTGGGCCTGC TTGATGATGC CGTGGAGGCG
CTGGTTGTTT CAGAAGAGAT CAAGCGCCGT TATCTTGACC TGGCCAATGC CGTGCAGCGG
CTGTATAAGG CTGTGCTGCC CGACCCGGCC GCGCATGCGT TTGTCGCCGA GGTGACGCCC
GTCAAGGTGA TTGCGGATAA AATCCGCGTT TTGGCACCGC CGGCCGACAT CTCCCAGGTC
ATGCAACAGG TGGAGGAACT GCTTGACCGC TCCATTGCCA CTGAGGGTTA CGTCTTTCGC
GAGATTGTTC CGCCTTTTGG CCACGAGCAC CAGATTGACT TGAGTGATAT TGACTTTGAA
AAGCTGGCTG AGAAATTTAA GACCGGCCGC AAGCGCACCA TCAATGAAAA GCTCAAAGGG
GCTGTGGCGA GGAAACTCAT GATCATGGTG CGGCTCAACC GCACTCGCAT GGATTATCTG
GAAAAGTTCC AGGCGATGAT CGACGCCTAC AACGCCGGCA GCCTCAATGC CGAGGCGTTC
TTTGAACAAC TGATGGCTTT TGCCGGGAGC CTGAATGAAG AAGAAAAACG CGGCGTAAGT
GAACAATTAA ATGAGGAAGA GCTGGTACTG TTTGACCTTT TAACCAAACC ACGGATTGAA
ATGAGCGAGG CGGATCGCAA CAAGGTGAAA GTCACTGCCC GGGAACTGCT GGCCACACTC
AAAACTGGCA AACTGGTGCT GGACTGGCGC AAGCGGCAAC AGGCGCGGGC TGAAGTCCGA
GTCCCCATTG AAAAGGTGCT TGATAAGGGG CTGCCAAGGG CCTACACACC GGAACTGTTT
GAGCAAAAAA CAGCGGCTGT TTTCCAGCAT GTCTATGAGG CTTACTGTGG TGCGGGACAA
AGTATTTACG CGGCGGCATA A
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| Protein sequence | MTPAGYTEDA LIEQPAIALF KELGWETVNA YHEFEQGGST LGRETKGEVI LALRLRSALL
RLNPDAPTEA IDQTIEDLTR DRSRMSPAAA NREVYHLLKH GVRVPVPDPE GDGETVEVVR
IIDWENPGKN DFLLCSQFWV TGEMYTRRAD LVGFVNGLPL LFIELKATHR RLETAFTGNL
NDYKDTIPQM FWPNGLVILS NGSQSRVGSI TAGWEHFSEW KKIGSEDEAG KISLETMLRG
VCEPARLLDL VENFTLFQEA PGGLIKLTAK NHQYLGVNNA LAALTDIRQR EGKLGVFWHT
QGSGKSVSMI FFAQKVMRKQ PGNWTFVIVT DRQELDGQIY KNFASAGVVT EGRAQAESSK
HLRQLLGEDH RYIFTLIHKF RAPEMISTRD DIIVITDEAH RSQYDTLALN MRTALPNAAF
LAFTGTPLIV GEEKTRQVFG DYISVYDFRQ SVIDGATVPL YYENRIPELQ LVNDNLNEEM
ARLLEEAELD EAQEKKLERE FSREYHLITR DDRLEAVAKD IVAHFTGRGF SGKGMVICID
KATAIRMYDK VKKHWAAKIA TLEAEKDTAP IEALPETEDR LAWMKETDMA VVVSQGQNEI
AEMANKGLDI RPHRKRVVEE DLDTKFKKPD DPFRLVFVCA MWMTGFDVPS CSTLYLDKPM
RNHTLMQTIA RANRVYPGKV SGLIVDYAGV FRNLEKALAI YGAGEGGDKP IEDKAALVAA
LRQVLEETGA LCQEQGVGLA AIRSADGFAR VGLLDDAVEA LVVSEEIKRR YLDLANAVQR
LYKAVLPDPA AHAFVAEVTP VKVIADKIRV LAPPADISQV MQQVEELLDR SIATEGYVFR
EIVPPFGHEH QIDLSDIDFE KLAEKFKTGR KRTINEKLKG AVARKLMIMV RLNRTRMDYL
EKFQAMIDAY NAGSLNAEAF FEQLMAFAGS LNEEEKRGVS EQLNEEELVL FDLLTKPRIE
MSEADRNKVK VTARELLATL KTGKLVLDWR KRQQARAEVR VPIEKVLDKG LPRAYTPELF
EQKTAAVFQH VYEAYCGAGQ SIYAAA
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