| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2225 |
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| Symbol | |
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| ID | 5695072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2696900 |
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| End bp | 2698207 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641264830 |
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| Product | peptidase S13 D-Ala-D-Ala carboxypeptidase C |
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| Protein accession | YP_001530106 |
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| Protein GI | 158522236 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGGCA GTAATCTGTT GATCACAGGA AAAAGGCGCG TGGCATATCA CTCTTTCAGC
TTTTCCCGGG CCGTGCGGAC CGTTGCCGTG TTGGCAACGG CCATGGTGCT GTGTACCGTC
GCCTTTGCGC CGGCTTTTGC CGAAAGGCCC CTTTCCCAAC TGCTCGAGCC TGGCGACAGT
GTGCTGGTAC AGCGCATGGA CGACGGCCGT GTGGTGCTTG CCGAAAATCC CGATACCCTG
CTGGTGCCGG CCTCTATTCT GAAAATCGTC ACCAGCCTGG CCGCGTTTGA GATCCTGGGA
AAAGATTTTC GTTTTATCAC CGAGTTTTAC ACAACCCCCG GCGGCGACCT GATTATTAAG
GGATATGGTG ATCCCAGCCT GGTGTCCGAA GAGATAGAGG CGGCCGCATT TCGCATCGCG
GCCATGGTGC CGTCCGTGGG TGACATTCTG GTGGACGCCT CTTTTTTTGC CCCCGGCATT
GCGGTCCCCG GCCGGAAAAT CGGATCGTCC CAGCCCTATG ACGCTGTCAA CGGAGCACTG
TGCGCCAATT ATAACACTGT GAATGTGACG CGAAAAGACG GCCGGTATGT CAGTGCCGAA
CCCCAGACCC CCCTGCTTGA CTTTGCCCGG CGGCGGATTG CAAGAATGGA CCCTTTTTCC
GGCAGGGTCG CGTTTATAGA AGACGCATCA GCGGCGGCCC TGTATGCCGG AGAGCTGTTT
GCCTGGTTTC TGGAAAAACA CGGGTGCCAT GTATCGGGCA AGGTGGCTTG CGGCCGGGTG
GAAAAGGGCA GGGATACCCT GGAGTTTACC CACGTCTCTT CATCCGCCCT GGGCGACAAC
GTGGAAAAAC TGCTGCGCTA TTCCAATAAT TTTACGGCCA ACCAGCTGCT GCTGGCCTGT
GGCGCAAAGG CTTACGGCCC GCCCGCCGAC CTGGCCAGGG GGGTGGCCGC TGTTCAGGAC
TACGTGAAAA CGGTTCTGGC CATTGACGGC ATGAAAGTGG TGGAGGGGTC GGGCCTGTCA
CGGGAGAACC GGATGTCTGC CCGCATGATG GCCGGTGTGC TGGCCGCGTT CGAGCCCTAT
GCCGGGCGAA TGCGCGTTTT TGGTAACGAG TATTACAAAA CCGGGACGTT GTCGGGGGTA
AACACCCGGG CCGGGTATTT TCTGTATGAA GACGGGCCGC GCTACCTGTT TGTTGTGATG
AGCAACACGC CGGGCAGAAG CGCGGATGTG CTCATGCCGG AGATCAGAAA GCGTGTCGAG
TCGGATCGCC GGCAGACCCC GGCAGGGCCG GGAGAGCTTA CGGATTGA
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| Protein sequence | MTGSNLLITG KRRVAYHSFS FSRAVRTVAV LATAMVLCTV AFAPAFAERP LSQLLEPGDS
VLVQRMDDGR VVLAENPDTL LVPASILKIV TSLAAFEILG KDFRFITEFY TTPGGDLIIK
GYGDPSLVSE EIEAAAFRIA AMVPSVGDIL VDASFFAPGI AVPGRKIGSS QPYDAVNGAL
CANYNTVNVT RKDGRYVSAE PQTPLLDFAR RRIARMDPFS GRVAFIEDAS AAALYAGELF
AWFLEKHGCH VSGKVACGRV EKGRDTLEFT HVSSSALGDN VEKLLRYSNN FTANQLLLAC
GAKAYGPPAD LARGVAAVQD YVKTVLAIDG MKVVEGSGLS RENRMSARMM AGVLAAFEPY
AGRMRVFGNE YYKTGTLSGV NTRAGYFLYE DGPRYLFVVM SNTPGRSADV LMPEIRKRVE
SDRRQTPAGP GELTD
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