Gene Dole_2166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2166 
Symbol 
ID5695012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand+ 
Start bp2626080 
End bp2626742 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content58% 
IMG OID641264770 
ProductDNA-(apurinic or apyrimidinic site) lyase 
Protein accessionYP_001530047 
Protein GI158522177 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0297232 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAAAAC AAGTTGTTGA CCTTGACCGA TTTGTGCGCG AACTGAAAAA AGCCAGAAAA 
AAGAGCCAGG CCCCGGTGAT CACCCTGATC GCCAACCGGG GCGCCACCCC CTTTGAAATT 
CTCGCATCCA CCCTGCTCTC GCTGCGAACA AAAGACGCGG TAACCGATGC CGCGGCCCGG 
CGCCTGCTGG CCGTGGCAAA TACACCGGAA CAAATCGCCG CGCTGCCGGC CCAAAAGATA 
GAAAAGCTGA TCTACCCGGT GGGGTTTTAT CCCACAAAGG CAAAACGCCT GATTGAGATC 
AGCCGCATTC TGCTCGAACG CCATGACGGC CGGGTACCCG ACGAAATGGA GGCCCTGCTT 
GCCCTGCCCG GCGTGGGCCG CAAAACGGCA AACCTCGTGC TGATCGAGGG GTTCGGCAGG 
GACGGCATCT GCGTGGACAC CCATGTACAC CGCATCAGCA ACCGCACCGG CATTGTGACG 
ACACGGACCC CGGAAGAGAC CGAGTTCGCC TTGAGAAAAA CACTTCCCAA AAAATACTGG 
AAACCCTACA ATGAACTCCT GGTTTCATAC GGCCAGACCA TCTGCGTACC GGTGTCGCCC 
TTTTGCAGCC GGTGCCCGGT TGAAGCCGAA TGCCCGAAGC AGGATGTGAC CCGATCGCGA 
TGA
 
Protein sequence
MRKQVVDLDR FVRELKKARK KSQAPVITLI ANRGATPFEI LASTLLSLRT KDAVTDAAAR 
RLLAVANTPE QIAALPAQKI EKLIYPVGFY PTKAKRLIEI SRILLERHDG RVPDEMEALL 
ALPGVGRKTA NLVLIEGFGR DGICVDTHVH RISNRTGIVT TRTPEETEFA LRKTLPKKYW 
KPYNELLVSY GQTICVPVSP FCSRCPVEAE CPKQDVTRSR