| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2151 |
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| Symbol | |
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| ID | 5694996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2610400 |
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| End bp | 2612616 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641264754 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001530032 |
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| Protein GI | 158522162 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGA CACCCTCTGT GAAAAAGAAA CCCGCATCCA CCGGAAAGCC GGGTACCGCA
ACGGGCAAGC CGGCCAAGGC GGCTAAAAAA GCCGCCTTGG CAAAACCGGC GAACAAGAAA
GCGGCGCCAA AGAAGGCCGC TCCCGTAAAA GGTGCTACCC GCAAGACAGC GTCCGGGACG
ACTGCCAGTG CTGCCTCGCC GGATAAAGTA AAAAAGAGCG GGCCGGCAGT CCGGAAGGCG
GGCGGATCAT CTGAAAAACC GGGGAAGGCG GGTGCTGCCG TCACGGCCAG GCCGAAGAAA
AAGACTGCGG TAAAGCAGAA ACCTGTGAAA AAGGCTGCCG CTGTCAAGGC GGCAGCCGAC
AGGAAACCCA AGGCAGGAGC CGTCGCTGAA AAGAAGCGAA AAGTGAGCCC AGCGGCCGGT
AAGGCGGGGA AGAAGGCCCC GGCCGGCAAA AAACGGCAGG CAGCGGCATC TCCCCCGCCT
CAGAATTTCA AGCAGAAACT GAGCGGGCTG ATCGCCAAGG GGAAAAAGCA GGGAGAACTG
ACCTACGAGG AGATTGCCAA GGCAATTGAG GCCAATGATA TTCCCACCGA TCAGATGGAT
GATCTGCTGG TGCATCTGGA TGATCTGGAT ATTTCGGTGG TGAAAAAGGC CGATCAGGCG
GATGATTCCG GAGAAGACGG GGCAAAGAGT ACCACCCGCG GCGACAGCCC GGTGACTTAT
GATTCAGACC CGGGTTCGGT GACCGATACG GTCAAGATGT ACCTTCGGGA GATGGGTCTG
GTCACCCTGC TGAGCCGGGA GGGAGAGGTC GAGATTGCCA AGAAGATCGA AGCAGGGGAA
CAGGAAGCCT TAAGGGGCAT GCTGGATACC GCCGTTGGGG TGGAGAGCAT CATCGCCTAC
GGCGATAATA TTGATGTCGG CAATCTGCGT CCCAAATCGG TTTTAAAGGA TGTGGATGAA
GGTGATGCAG GAGAGGAAGA GATCCTGCGG ATCGATGCGT TTGCCGCCAC CATTCGGCAG
ATTAAAGCAC TGGATGCAAC CATCCAGCCC CTTCGGCAGA AACACCTGTC CGTTTCGCTC
TCCGCAACTG AACGCAAAAC CGTTGCCGAG CAGCTCACCC GGAAGACCGA CGAGATTTTT
GAACTCCTTC TTCCGTGGCG GCTGGAGAGT GAAGTGCTGG ATGCCATGGA GGAACGGATT
CAAGATGAGA TCAAGTGGTT TGACACCATG GAGCAGACCA TTGATCGACG GCTCGCCGGG
CTGGGAGCCG GAGGCGCCGT TTCCACTATC CGGTCGAAAA TGAAAACAAA GACCGGGTTT
GTAAACTGGG CCTACCCGCG CATGCAGACC ACCAAGGTGC ATCTTGCCGC GTTTTACGAC
GAGATCAAAT CCCTTGAAAG GCAGATGGAG ATCCGCGAAC GGGCCATCAT GGCCGACCGT
CGCCTGCTGC GGAAAACCAT GAAGAAAATA GATGACGGCT ATCTGCGGGC CAAGGCGTCC
AAGAGCGAGC TGATCCGGGC CAACCTGAGG CTGGTGGTCA GTATCGCAAA AAAATACACC
AACCGGGGCC TGCAGTTCCT GGACCTGATC CAGGAGGGCA ACGTGGGGCT GATGAAGGCC
GTGGATAAAT TCGAATACCG TCGCGGCTAC AAGTTCAGTA CCTATGCCAC CTGGTGGATT
CGTCAGGCCA TTACCCGGGC CATCGCGGAC CAGGCCAGAA CCATCCGTAT TCCGGTCCAC
ATGATCGAAA CCATTAATAA GCTGATCCGG ACCTCCCGGT ACCTTGTGCA GGAGCGGGGC
TACGAGCCGT CGCCCGAAGA GATCGCGGAA AAGATGGAGA TCCCCCTTGA AAAGGTCCGG
CGGGTGCTCA AGATCGCCAG GGAGCCCATC TCTCTTGAAA CCCCCATCGG CGAAGAGGAA
GACAGCCACC TGGGCGATTT TATCGAGGAC AAGAAGTTCA TGATTCCTTC GGAAGCCGCG
GTCAGCATGA ACCTGTCCGA ACAGACAAGA AAGGTGCTGG CCACGTTGAC GCCCAGGGAG
GAGAAGGTGC TTCGCATGCG TTTCGGCATC GGCGAAAAGG CAGACCATAC GCTGGAGGAG
GTCGGCAGGG ATTTTGCCGT GACCCGGGAG CGCATTCGCC AGATCGAGGC CAAGGCCTTG
CGAAAGCTTC GGCACCCCAC ACGGAGCAAG ATGCTCAAAC ATTTTATCGA GTCCTGA
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| Protein sequence | MAKTPSVKKK PASTGKPGTA TGKPAKAAKK AALAKPANKK AAPKKAAPVK GATRKTASGT
TASAASPDKV KKSGPAVRKA GGSSEKPGKA GAAVTARPKK KTAVKQKPVK KAAAVKAAAD
RKPKAGAVAE KKRKVSPAAG KAGKKAPAGK KRQAAASPPP QNFKQKLSGL IAKGKKQGEL
TYEEIAKAIE ANDIPTDQMD DLLVHLDDLD ISVVKKADQA DDSGEDGAKS TTRGDSPVTY
DSDPGSVTDT VKMYLREMGL VTLLSREGEV EIAKKIEAGE QEALRGMLDT AVGVESIIAY
GDNIDVGNLR PKSVLKDVDE GDAGEEEILR IDAFAATIRQ IKALDATIQP LRQKHLSVSL
SATERKTVAE QLTRKTDEIF ELLLPWRLES EVLDAMEERI QDEIKWFDTM EQTIDRRLAG
LGAGGAVSTI RSKMKTKTGF VNWAYPRMQT TKVHLAAFYD EIKSLERQME IRERAIMADR
RLLRKTMKKI DDGYLRAKAS KSELIRANLR LVVSIAKKYT NRGLQFLDLI QEGNVGLMKA
VDKFEYRRGY KFSTYATWWI RQAITRAIAD QARTIRIPVH MIETINKLIR TSRYLVQERG
YEPSPEEIAE KMEIPLEKVR RVLKIAREPI SLETPIGEEE DSHLGDFIED KKFMIPSEAA
VSMNLSEQTR KVLATLTPRE EKVLRMRFGI GEKADHTLEE VGRDFAVTRE RIRQIEAKAL
RKLRHPTRSK MLKHFIES
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