Gene Dole_2117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2117 
Symbol 
ID5694960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2571066 
End bp2572307 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content62% 
IMG OID641264718 
ProductNa+ dependent nucleoside transporter 
Protein accessionYP_001529998 
Protein GI158522128 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000427542 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACAAA GCCTTCTGGG CCTTGGGGCC TTTGTTCTGA TGGCCTGGCT GATCAGCGAA 
AACCGTTCTT CGGTCCGGCT CAAAACCGTG GCCGCGGGCG TGGGCCTGCA ACTGGCACTC
GGCGTCCTTC TGCTCAAAAC ACCGGGCACC ACCGACCTTT TTCTCATGTT AAACAAAATC
ATCCTGGCCG TGGAGACATC CACCCGGGCC GGCACCGCCA TGGTGTTCGG CTACCTGGGC
GGAGGCGACC GGTTTCCCTT TGCCGTCACC GACCCCGGCG CCACCTTTAT GCTGGCTTTT
CAGGCCCTGC CCCTGGTGCT GGTGATGAGC GCGCTTTCCG CCCTGTTTTT CTACTGGAAG
ATCCTGCCGG CCGTGGTGCG GGGCTTTTCC TGGGTGCTGC AAAAAACCGC GGGCCTGGGC
GGCGCCGAAG GCGTGGGCCT GTCGGCCAAC ATCTTTGTGG GCATGGTGGA GTCCCCCCTG
CTGATCCGGC CCTACCTGGC GAACATGACC CGCAGCGAAA TATTTTCCAT CATGACCTGC
GGCATGGCCA CCATTGCCGG CACCGTGATG GTGCTGTATG CCAGCATTTT AGGTCCCGTG
ATTCCCAATG TGATGGGCCA TATCCTGACC GCCTCGATCA TCAGCGTGCC CGCGGCCATC
ACCATTGCCA AGATACTGGT GCCGGAGACC AGCCAGCCCA CGGCCGGCCG CCTGGACCCG
CCCCAGACGG CCGACAGCGC CATGGACGCG ATCACCAAAG GGACCCTTCA GGGCATCGAA
CTCCTGATCA ACATCGTGGG CATGCTGATC GTGCTGGTGG CCCTGGTCAC CCTGGTCAAC
CTGCTGTTGG AATTTCTGCC CGACGCCTGG GGGGCGCCGC TTACCCTTCA GCGGCTTCTG
GGTTTTTTAA TGGCGCCGGT GGTCTGGTTG ATGGGCATTC CCTGGGATCA GGCCCCCACG
GCCGGGGCAC TGATGGGCAC CAAGACCGTT TTAAATGAAC TGCTGGCCTA CCTTGAAATG
AGCGGGCTGC CCAAAGGCGC TCTTGACCCG AAAAGCCTGC TGATAATGAC CTATGCCATG
TGCGGGTTTG CCAACCCCGG CAGCTTGGGC ATCATGATCG GAGGCCTGGG CACCATGGCG
CCGGAGCGGC GCCCGGAGAT CGTCTCCCTG GGCCTTCGTT CCATCGTGGC CGGCACCCTG
GCCACCTGCA TGACCGGCGC CGTTGTGGGT CTCCTGATGT AA
 
Protein sequence
MIQSLLGLGA FVLMAWLISE NRSSVRLKTV AAGVGLQLAL GVLLLKTPGT TDLFLMLNKI 
ILAVETSTRA GTAMVFGYLG GGDRFPFAVT DPGATFMLAF QALPLVLVMS ALSALFFYWK
ILPAVVRGFS WVLQKTAGLG GAEGVGLSAN IFVGMVESPL LIRPYLANMT RSEIFSIMTC
GMATIAGTVM VLYASILGPV IPNVMGHILT ASIISVPAAI TIAKILVPET SQPTAGRLDP
PQTADSAMDA ITKGTLQGIE LLINIVGMLI VLVALVTLVN LLLEFLPDAW GAPLTLQRLL
GFLMAPVVWL MGIPWDQAPT AGALMGTKTV LNELLAYLEM SGLPKGALDP KSLLIMTYAM
CGFANPGSLG IMIGGLGTMA PERRPEIVSL GLRSIVAGTL ATCMTGAVVG LLM