| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2105 |
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| Symbol | |
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| ID | 5694948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2556736 |
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| End bp | 2558502 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641264706 |
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| Product | PAS modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001529986 |
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| Protein GI | 158522116 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0394] Protein-tyrosine-phosphatase
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00514129 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGG GCACCATTCT TTTTTTGTGC AGGGATAACA GCGCCAGAAG CCAGATGGCA
GAGGGCTTTG CCAGGCAAAT GGCCGGTGAC AATATTTCGA TTTTCAGTGC GGGCATCACG
CCCGATCAGG AGGTCCACCC CATGGCCGTG GAGGTGATGG CCGAGCATGG CATTGATATT
TCCGGCCATC GGCCCAAGGC GGTTTCAGCG TTGAGAGCGG GCCATTTCGA CCTTGCCGTG
GACCTCTGCC AGACCCTTGG CCAGGAGTTT CCCATGCTGG CCGGATTCCC CCCCCTGGTG
TGCTGGACCG TGGCCGATCC GGCGGAAGCT GTGGGGGATC TTGAGGGCCA ACGGGTGGCA
TTCCGGGAAG CGGCCCGGAT TATAAAGGAC TTGGTCCACG ACCTTCTGAA CCGGGGATAT
TACGCCTCTT TTTCTCTATA CAAGGCCAAT ATCGAACGGC TTATCGACAA CCTTCACGAG
GGGGTTCTGG CCCATGACCT GGGCCGGAAA ATCTTTTTTT TCAGCAAAGG GGCTGAAAGG
ATCACCGGCC TGTCCGCCGT GGACGTGATC GGTAAAAACT GTCACGACGT GTTTGTTCCC
CGCCTGTGCG GAGAGAACTG CTCTTTCTGT GATGGGTGCG AACCCCCGAC GTTTCAGAAA
AAGAGTTATT CCACCGTGGC GCCGGAAATT GAGGGCCAGC GCAAAGAGCT GGATGTGACG
GTGGTGCCCC TGCGGGACCC GGCCGGCCGT ATTCAGGGCG TCGTGGCGGC TCTGGCCGAC
CAGACCGCCT TCAAGGAGGC GGTCCGCGGC CAGAAGGGGG AGGATGGATT TGCCGGCATC
ATCGGCCGAA CACCGGAGAT GCGAAGCCTT TTTCACCAGA TTCGCGACCT GTCGGTCTAT
GATGTGCCGG TGAATATCAG CGGTGAGACC GGCACCGGGA AAGAACTGGT GGCCCGGGCC
ATTCACGGCG AAAGCACCCG GCGTAACGGA CCGTTTGTGC CCATCAACTG CGGTGCCCTG
CCCGAGGGGC TGGTGGAAAG CGAACTGTTC GGCCATGTGC GGGGCTCTTT TTCTGGGGCC
GTGCGTGACA AGAAAGGCCG GTTTGAGCTG GCCCATAACG GGACCATCTT TTTAGACGAG
GTGGCCGAGC TGCCCATGTC CACCCAGGTC AAGCTGCTGC GGTTTCTCCA GGAGGGGGTC
CTGGAAAAGG TGGGCAGTGA AAAACAGACC TCGGTGGATG TGCGGGTGAT CAGCGCCACC
AACAAGAACC TGAAAAAAGA GGTGGCAAAG GGGACGTTCC GCGAAGACCT TTACTACCGG
CTCAACGTGG TGCCCATTCA CCTGCCGCCG TTGCGCATGC GGAAAAACGA CATTCCCCTG
CTGGCCAACT ATTTTGTCAG GCATGCGGCC ATGGGCGCCC GAACCGGCAA TGTCACCATC
ACCGATGATG CCATGGGCCT GCTGGCGGAA TACGCGTGGC CCGGCAATGT GCGGGAGCTT
CAGAATATCA TTCAGTTCCT GGTAATCAAG GCGTCCGGTA ACAAGATCAC GGCGGCCCAT
CTGCCGCCGG AAATTCAGGG CGACGGCACG CCGCTTCCCC AGAAGCGGGG CCGGCGCAAC
AAACTGGACA CGGGCAGCGT GGAAACGGCC CTGGCAAAAG CCGGCGGCAA CAAGGCCAAG
GCGGCCCGCC TGCTGGGCGT GGGCCGGGCC ACCCTCTACC GGTTTCTCAA CGACCACCCC
GATATTGTTG CTGATGAAGA GATCTGA
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| Protein sequence | MNKGTILFLC RDNSARSQMA EGFARQMAGD NISIFSAGIT PDQEVHPMAV EVMAEHGIDI
SGHRPKAVSA LRAGHFDLAV DLCQTLGQEF PMLAGFPPLV CWTVADPAEA VGDLEGQRVA
FREAARIIKD LVHDLLNRGY YASFSLYKAN IERLIDNLHE GVLAHDLGRK IFFFSKGAER
ITGLSAVDVI GKNCHDVFVP RLCGENCSFC DGCEPPTFQK KSYSTVAPEI EGQRKELDVT
VVPLRDPAGR IQGVVAALAD QTAFKEAVRG QKGEDGFAGI IGRTPEMRSL FHQIRDLSVY
DVPVNISGET GTGKELVARA IHGESTRRNG PFVPINCGAL PEGLVESELF GHVRGSFSGA
VRDKKGRFEL AHNGTIFLDE VAELPMSTQV KLLRFLQEGV LEKVGSEKQT SVDVRVISAT
NKNLKKEVAK GTFREDLYYR LNVVPIHLPP LRMRKNDIPL LANYFVRHAA MGARTGNVTI
TDDAMGLLAE YAWPGNVREL QNIIQFLVIK ASGNKITAAH LPPEIQGDGT PLPQKRGRRN
KLDTGSVETA LAKAGGNKAK AARLLGVGRA TLYRFLNDHP DIVADEEI
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