| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2079 |
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| Symbol | |
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| ID | 5694922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2530358 |
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| End bp | 2531449 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641264680 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001529960 |
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| Protein GI | 158522090 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0038813 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGATA CCTATTTCAT GAATATGGCC CTGGGCCTGG CCGAACGGGG AACCGGTTTT
ACTTCTCCCA ACCCCGTGGT GGGTGCCGTG GTGGTGCGGG ACGGCCGGGT GGTGGGCCAG
GGGTTTCACG CGGCAGCGGG AAAACCCCAC GCCGAAGTGG TGGCCATTGA CGATGCCGGT
GAACTGGCCC GTGGCGCCGA TCTTTACGTG ACCCTGGAAC CCTGCAATCA TACGGGCCGG
ACCCCGCCCT GTACGCGGAA GATTTGCGAT GCCGGCATCG CCCGGGTGGT GGTGGCCACG
ATCGACTCCA ACCCCCACGT GGCCGGCGGC GGCATTCAAT ACCTGGAGTC CCGGGGTATT
GCCGTTACTG TGGGGGTCTG CGAGGCCGAG GCCAAAAAGC AGATCGAGTG GTTTGCAAAA
TATGTGACCA CGGGGCGGCC TTTTGTCACG GTCAAGTGCG CCATGACGTT AGACGGCCGC
ATCGCCACAC GCACCGGCGA TTCCAAATGG GTTACCGGAG AGGCGGCCCG TGCCTTTGTG
CACAGGATGC GCCACGCGTC CGACGCCATC CTGGTAGGCG TGGGCACGGC CAACGCCGAT
AATCCCCGGC TCACGGCCCG GGTTGAGGGC ATGCGAACCA GAGATCCCAT GCGGATCGTG
CTGGACACAA AGCTCTCCAT TCGAGAGGAT GCCGCGATGT TTGACCTGGA TTCGTCCGCT
GAAACGCTGA TCGTGGTGGG GCCGGGGCAT GACAAAAAAA AACGGGACCG GCTCAAGGGA
AAGGCCCGGT TTTTTGATGC GGCGCTGGCC ATCGGTCGGA TTGACATGGC CGGGCTCATG
GACGGCCTTG GAAAGATGGG GATTACCAGC CTGCTGATTG AGGGAGGGGG TCAGGTGATC
GGGGCCGCGT TTGCGGCCGG CATCGTGGAC AAGGTATGCT TTTTTTACGC CCCGAAAATT
CTGGGCGGCG ACGACGGTGT TCCCGTGTGC GCGGGAGCGG GACAGGAACA GATGAAAAAT
GCGTTGCCGG TGCGGAATGT GTCCGTGACC CGGTTTGATG ATGACATTCT GATCGAGGGG
TATGTGTCCT GA
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| Protein sequence | MDDTYFMNMA LGLAERGTGF TSPNPVVGAV VVRDGRVVGQ GFHAAAGKPH AEVVAIDDAG
ELARGADLYV TLEPCNHTGR TPPCTRKICD AGIARVVVAT IDSNPHVAGG GIQYLESRGI
AVTVGVCEAE AKKQIEWFAK YVTTGRPFVT VKCAMTLDGR IATRTGDSKW VTGEAARAFV
HRMRHASDAI LVGVGTANAD NPRLTARVEG MRTRDPMRIV LDTKLSIRED AAMFDLDSSA
ETLIVVGPGH DKKKRDRLKG KARFFDAALA IGRIDMAGLM DGLGKMGITS LLIEGGGQVI
GAAFAAGIVD KVCFFYAPKI LGGDDGVPVC AGAGQEQMKN ALPVRNVSVT RFDDDILIEG
YVS
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