Gene Dole_2060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2060 
Symbol 
ID5694903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2511579 
End bp2512508 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content61% 
IMG OID641264661 
Productperiplasmic binding protein 
Protein accessionYP_001529941 
Protein GI158522071 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.182535 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAGT TTTTCTCAAT GCAGTTCCGC CGCATGGCGG TGGTAACAGC CCTTATAACG 
TTTTTGTGTC TGCCTGTGGC CTACGCGAAA ACAGTGACCG ACCCGACCGG CCGCACCCTT
GAGGTGCCGG ACAGTCCGAG CCGCGTGGTG TCCCTGGCAC CCAGCATCAC GGAAATCATA
TTCGCCTTGG AACGCCAGGA TGTTTTAAAA GGCGTCACCC AGTACAGCGA TTATCCGCCG
GAAGCCCTGC AACTGCCCAG GGTGGGTTCT TATGTGCACC TGGACCTGGA ACGCATCGTG
GCCCTGTCGC CGGACCTCTG CATCGCCATC AAGGACGGCA ATCCCAAGCA GGTGGCCGAC
CGGCTCACCG AGCTGGGCAT TCCGGTCTAT GCCGTCAACC CCTTTGACCT GAACACGGTG
ATCCAGACGG TCGAGGAGAT GGGCACGCTG CTCAATGCAA CGAAAAAGGC CGGGCAACTG
GCCGACAGCA TGCGCGCCCG CATCAACCGC ATCGACCGGC TGGTGGCGTC AATCCCGCAC
CGGCCGGCGG TCTTTTTCCA GATCGGCATC TCCCCCATTG TATCAGCCGG CACAGACACG
TTTATCAATG AGCTGATCAC CCGGGCCGGA GGAAAAAACC TGGCCGCCGG TCAAACGCCC
TATCCCCGAT TCTCCGAGGA GGAACTGGTG GGCCTTGCCC CGGACGTGGT GATCATCACC
TCCATGACCC GGGACGGCGA GTTTGACAGA GCCATGGCCC AGTGGCGCAA ATGGGACACC
CTGCCCGCAA TAAAAAGCAA CCGGATTCAC CTGATCGACT CCAACCTGGT GGACCGGCCC
ACCCCCCGCA TCGTGGAGGG CCTGGAAACC CTGGCCCGGC TGATTCACCC GGAACTTTTC
TCCGGCACCC CTTCAGAGGA TACACCATGA
 
Protein sequence
MKQFFSMQFR RMAVVTALIT FLCLPVAYAK TVTDPTGRTL EVPDSPSRVV SLAPSITEII 
FALERQDVLK GVTQYSDYPP EALQLPRVGS YVHLDLERIV ALSPDLCIAI KDGNPKQVAD
RLTELGIPVY AVNPFDLNTV IQTVEEMGTL LNATKKAGQL ADSMRARINR IDRLVASIPH
RPAVFFQIGI SPIVSAGTDT FINELITRAG GKNLAAGQTP YPRFSEEELV GLAPDVVIIT
SMTRDGEFDR AMAQWRKWDT LPAIKSNRIH LIDSNLVDRP TPRIVEGLET LARLIHPELF
SGTPSEDTP