| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2050 |
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| Symbol | |
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| ID | 5694893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2494250 |
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| End bp | 2500057 |
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| Gene Length | 5808 bp |
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| Protein Length | 1935 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641264651 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001529931 |
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| Protein GI | 158522061 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.149487 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAAAC ATAAAATACT ATTCAAAGTT CATCTCGCCT GTATACTGGC CATGATTATT
CACGCTGTTT TTGCTCCAAG TGTTTTTGCT GACTACACGG TATGCAAGGG GCCGGATTGC
TGTCTGATTC CCGGCGATCC TGACGGTGTT GAGAATGATC TATATTATAA GATTCAAGGC
GGGTTAAAGC AGTATCAGAG ACTTGTCCCT TCCGGGCTTG GCGGTGTCGG TGCGACCGAT
TGCGGGTGGC CCGGGCAAAA GACATTTGCG GAGATTTTCA ACAGCACGTT GGCAACTACT
CAAGCCCAGG GCGATTGCGA GGAGTGTCTT ACGCTGCCCT CGAAAGATGG CCATGGCTGG
GGTCGCATCA AGGGTTCTAC GGTTTACGGG TACAGTGAAA ATTATTCATG CTTTCAATGG
CCTGATGTCG ATAACACGTG GCCAGGTACC CGCTCTGAGG TTTTCGGATA TAATCTTATC
AGCAAAAAAG TCGTATGCAT CGACGCCTTA AGCGACATCG ACGGAGACGG CGTGGGCGAC
TGTACCGACA ACTGTCCATC GGTGCCCAAT CCCGACCAGA GGGATTGCGA TGACGACGGT
AAGGGCGACC TCTGCGATTG CGATCTGCAG GCCAAGGCCA CAAAGACACG CATCGCTCCA
GAAGAGTATA CGATTATTAA GGATCCGGGT TGCGCCAGCC AGGGGGACAT CAGATGGGAG
GTTGTCCCAG AAAAGGATGT GGTTGTAAAT ATTTCACCCG CCTCTGATGT GCCGGGTGCT
CTGGTGGTCG ACTCTGCCGC ATCGATTACC GTATATGCGG TTTCGGGTGC CGGTCATGTT
CTTGTCAAGG CCACATCAAA TATAGTACCG GGCTGTACGG ACACCATCAA CATTACCGTG
GGTTGTGATG ATTCCTGCGG CAGTGGCGGC AGTTGTTCTT CAGGAGGCTC TTTTGGTGCT
GAAAACGGGA GCATCAAGGC AAAGCTCAGC CTTGGCAGGG AAAAAGACGG AACTTCTGCA
GGCGAGATCC TGTTACAGGC CGATACGGTA TCGGCCGATT TGGTCACGCC CGACGCCCTT
GATGTGTATT TAAACGGTGA TTCCTGGAAA GCTTTGAATC CCGACGGCAC TCTCGGGCAG
GTTGTTTCAC GGGAGGTTTG TGTCGACATT AATGTTATTG ATGAGTATGA ATATGAAGCC
AGTATCTACC GGGTAGATCC CTATTCCAGT CGATGGCTGA ACGCATTCAC AATTAAAGGA
TTTTATCCTT ATGATACCAA TATTCAGCCC ATTGCCGTCC TGATTGTTGA AAATCCGGAC
AAAGAGACCG CCGAGAACCG TCTGACAATG ACCTACTGGA AAGACGGATC CCAGACCGTC
TACGCCTATG AATGGGACGA GGTCGCTTCC ACCTGGACCC TTTCAAATGG CGACGGCGCC
ACAGTGGCCC AGGTGATTGC CAAGTCCAAG GTAACGGATA CCAACGGCAA CCGGATTGAA
ACCGAGACCA TTAAAAACGG CTCAGGCACG GCCTCTTCGG TTATCCGCAC CACATATAAA
GACATCACGT GTGGCGGCCA TGCCCGGCCC CTTGAAATCG AAAAAGTGGT GGACCCGGAC
AACGCGGCCC TGACCACTGT CACCGACTAT TATGAGGAAG GGGAGGCCGG CTGCACCACC
GGCAACTGCG GGTGGATAGA AAGCAGAACC TATGCGGACG GCTCCTGGGT AAAATATGAG
TATGACGGCC GGTCCCGCAA AATCAAAGAG GCGCGCTCCT GGCTGGACCA GCCCATCACT
GCGGCAGAAA TGGCCGTGCG GGTGATCACC TATGATTACA CTCCCATCAG CGGGTCAGGC
GATACCAATG ACGTGGAGTA CGAGCTGCGC CCCCGCACTG TCACAGAAAC CACCGAAGGG
CATGTGGTGT CTAAAGACTA TTATGTCTAT CAGAAAGACG ACACAAACAA CGTGGTCACC
GAAATTCACG AAATTGCGGC CACGCCCGCG GCAGCCTACG GCAACACGGC CAACCGCCGT
ACCGTTACCG TCACTTATCT TCCCTGGGGA GGTGCTGGCG CTGGCGAAAT CAAGGGGCAG
ATCCACCCGG ACAACACAAA AGAGACCTAT ACCTATGAGT CCGGCATCTA CACGCCCGCC
GATCCAGGCC TGGGCACATT TATCACCGGC AGCGGCACCG ATGTGCGCGT TACCGTTACC
CACGGCACAG CTGCCGCGCC CAACGGCATT GCCAACAAAA CCACCCGGGA GATCATTATC
AGGGACGAAA CCGGCAGGGA ACTGGCCCGG CAGACCCTTG TTTATACCGG CACCGGATAT
GAGCCGGTCT CCTGGTCGGT CATGGCCTAT GACGACGATC ATCATCTTAC CGATACCTGG
TACTCGAACG GCACCCACAC CGCAGCCACA TGGGGATGCT GCAACAAGGA AAACGAAATC
GATATCTATG GCATGGTCAC CGACTATACC GGTTATGACC CGCTCGGCCG GCTCACCCAG
GCCGTAAAGA ACAACATCAC CACCACCTGG ACCTACGACG GCAGCGGCCG GCGCCTGACA
GAAACCGTCA CCGGCGGGGG CCTGACCCTT TCCAGCCAGA ACATTTACGA CCTGGCCGGC
CGATTAATTA CGTCCACGGA CACTGCGGGC CTGACCACCG ACTATGACTA TCAGAACAGC
GGTCGCACCA CCACTGTCAC CCGGCCGGGC GGGGCCACCG AGATCACCGA CACTTACCTT
GATGGCCGGA TCAGAAGCAT CACCGGCACC GGCGTTGTTT CTCAATACTA TACCTATGGC
GTCAATGCCG ATGGTTCCCA ATGGACCCGT GTCGATATCG GCAGCCCTGC GTCCGACCGT
TACGAGATCA CCACCTATGA CATGGCCGGT AACATGATCC GCACGGAAAA ACCCGGCTAC
ACCGGCACGC AGGCAACTGA AAACACCTAT GACGTTACCG GCCGCCTGAT TGCCACATCC
GCTCCGGGCC TGGCCGATAC GCTTTATGAA TATGACGAGT TGGGCAACAT GGTCCGCTCC
GGCCTGGATG TCAATGATAA CGGCGTGCTG GATGACGGAT CGTCAGACCG CATTCAGGAA
AGTGTCACTC AATACTCCAA CGACGGCACC GACTGGTGGC AGGAAACCAC CGGCAAAATT
TTTGCCGTCA CCGGCAGCAG CACCCCCACC ACCACGGGCA TTCAAAAAAC CAGGCTCACC
GGCCTGGGCG CAAACGGCCT TGTCAATGAG ACCGTTTCTA CTGACATTAA CGGCAACCAG
ACCGTTGCCC GGACCGTTAT CGACCCTGCC ACCCAAACTG TAACGCAGAC AGTGGACTAC
CCGGATGCAT CCTTTAACGA AGTTACTGTC ACGACAAACG GACTGCTGCA ATCCCGGCAG
AGCAAAACCG GTGTGACCAC CACCTTTTCC TGCGATGGAC TGGGCCGCCG GACCGGGGCC
ACCGATTCCC GCACCGGCAC CACTGTTACC CATTACAACA GCCTGGGCCA GGTGGATTAT
GTGGAAGATG CCGCAGGCAA CCGGACTACA TTCATTTATG ATGCAGCCGG CCGCCGTGAA
ACAGAGACCA ATGTCCGGGG CAAAACCATC CGCTACGCCT ACAACAGCCT CGGACAACTG
ACGTATAAAT GGGGCAGCGC GGCCGAACCG GTAAAGTTTG TGTATGACGC TTACGGCCAG
ATGATCCAGA TGCACATGTT CCGCAACGGC TCTGGTTGGG ACGGGACAGA GTGGCCATCA
GGTTCCACCG GAGATCCAGA TATCACCACC TGGACCTATC AGCCGTCCAC CGGCCTGCTC
ACTGCCAAGA CCGATGATGA GGCCAAATCC ACGGCCTACA CCTACACCGC CGCCAACCGG
CTGGCTACCC GCACCTGGGC ACGGGATAAC GGCACCCTTG TCACCACCTA CACCTATGAT
CTGAATACCG GGGAACTCAC TGGCATTGAT TATTCTGGCA CCACGCCGGA TGTGGCCTAT
GCCTACACAC GGGCCGGGCA GATGTATACC GTGGACGATG TTGTGGGCAC GCGCACCTTT
GCCTATAACA GTGCCCTGCA ACCCGTCACA GAAACCATCG ACGGCGCTTC CGGCGGGCTG
TACAGCAAAA CCATCACCCG CACATACGAG ACCTCCGGCG TGGTGGGCCG GCCCACCGGG
TTGAGCCTTA CAGGCTACAG CGTGGCCTAT GGGTATGAGC CTTCCACCGG CCGGTTTGCA
GGCGTCACCT GGAACACCGG GGCCGGAGAA AAGACGGCCA CCTATGCGTA TGTGGCCGAC
TCTGATTTTG TCGACACCCT GACCATGGAG AATCTGGTCA CGGATTTTGT CTATGAGCCG
AACCGGGACC TCAAAACCCA GGTCAGGCAC ACGTTTGGTG GGGCCGATAT TGCCCAATAT
GATTATACCT ACACCGCCCT TGGCCAGCGC AAGACCATGG ACCTGACCCC GGACCTGCCG
GATACCCTGG TCGAGGCTAC CACCACCTAT ACGCCCGATA ATTTAAACCA GTACGATGCC
ATTGAAACTG GCGGCGTAAC AGATAACCCG GTCTATGATG ATGACGGCAA CCTTACCCAC
CAGCAGGGCA TGGTTTATAC CTGGAACGCG GAAAACCGCC TCATCTCCGT GGAACCCGAG
ACCCCGACCG AAGGAAATAC CAAACTGGCC TTTGTGTACG ACTACATGGG CCGAAGGGTG
AAAAAGGCCG TCTATACATT CAGCGCCGGC AGCTACCAGC TGTCAGCTGC CAGCTTATTT
GTCTATGACG GGTGGAACCT GATCCAGGAG CTGGATGGAA CCGGTGCGGT GCAAAAGTCC
TATGTGTGGG GCCTTGACCT CTCCCAGAGC CTGCAAGGAG CCGGTGGCGT GGGCGGCCTG
CTGGCCATGA CCGACGGGGT GAATACTTAC CTCTACTGCC ATGATGCCAA CGGCAACGTG
GGCCGCATGG TGAGCGCGGC AGATGGAACG GTTGCGGCAG CTTATGAATA TGCCCCGTTT
GGCGGGCTGA TTCATAAAAG CGGGGTTATG GCGGATGAGA ATGTGTTTCG GTTCTCGACG
AAGTATTGGG ATGGGGAGAG TGGGCTCTAT GAATACGGCT TGAGGTACTA CGATCCTGAA
ACCGGACGGT GGATCAGCAG AGACCCGGTC GGAGAAAGTG GTGGGCTGAA TCTTTATTCT
TTTGTAATGA ATGACCCTAC TAATTTCTTT GATCTGCTTG GACTTGTTCA GGTTGGAGGG
TCTGAAGGCT ATAGCTCTGA TTCTATGTAT ATCGACATAA CATGGTACAA GCCGAAATCA
TTGTATTTAT TATTTAAATG TAAAGGATGC CCTGATGTGA ATGAGGCTCC TGTAGCCGGC
AGAACAGTTG ATATTGACTA TGATAAATCC AATTTTAAAG TAGAGACAAT CATAAAGTAT
GTATTGAAAA TCGTATCAGG TGGCGAAGAT GCTGATTTAT TTTGGACCTA CAATAGAGAA
AAACGTTATT ATTCTTCGCT TCCCGGCGAA GCCAAGAAAG ATATCGAAAT AGGAAGACCC
TGTTGGGTTA AAATCTCCTG TGAGGTGAAT TGTGAATGTT CATGCGGTGG CGATGCCTGC
CATTCATGGA AAACCCGATG GGGAGATAAA TGGATTTCTG GAAGAGTTAC TACTTCTATG
AATTGGGGAT TAGGACCGAA AGTCTGTGAA GTTTCTGATT TTAGGCTTGA TGCAAAGAAG
AGGCAGTGTA GGCAGGAAGC GAAGGGGAAA TGTAAATCGT GTTTATAG
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| Protein sequence | MGKHKILFKV HLACILAMII HAVFAPSVFA DYTVCKGPDC CLIPGDPDGV ENDLYYKIQG
GLKQYQRLVP SGLGGVGATD CGWPGQKTFA EIFNSTLATT QAQGDCEECL TLPSKDGHGW
GRIKGSTVYG YSENYSCFQW PDVDNTWPGT RSEVFGYNLI SKKVVCIDAL SDIDGDGVGD
CTDNCPSVPN PDQRDCDDDG KGDLCDCDLQ AKATKTRIAP EEYTIIKDPG CASQGDIRWE
VVPEKDVVVN ISPASDVPGA LVVDSAASIT VYAVSGAGHV LVKATSNIVP GCTDTINITV
GCDDSCGSGG SCSSGGSFGA ENGSIKAKLS LGREKDGTSA GEILLQADTV SADLVTPDAL
DVYLNGDSWK ALNPDGTLGQ VVSREVCVDI NVIDEYEYEA SIYRVDPYSS RWLNAFTIKG
FYPYDTNIQP IAVLIVENPD KETAENRLTM TYWKDGSQTV YAYEWDEVAS TWTLSNGDGA
TVAQVIAKSK VTDTNGNRIE TETIKNGSGT ASSVIRTTYK DITCGGHARP LEIEKVVDPD
NAALTTVTDY YEEGEAGCTT GNCGWIESRT YADGSWVKYE YDGRSRKIKE ARSWLDQPIT
AAEMAVRVIT YDYTPISGSG DTNDVEYELR PRTVTETTEG HVVSKDYYVY QKDDTNNVVT
EIHEIAATPA AAYGNTANRR TVTVTYLPWG GAGAGEIKGQ IHPDNTKETY TYESGIYTPA
DPGLGTFITG SGTDVRVTVT HGTAAAPNGI ANKTTREIII RDETGRELAR QTLVYTGTGY
EPVSWSVMAY DDDHHLTDTW YSNGTHTAAT WGCCNKENEI DIYGMVTDYT GYDPLGRLTQ
AVKNNITTTW TYDGSGRRLT ETVTGGGLTL SSQNIYDLAG RLITSTDTAG LTTDYDYQNS
GRTTTVTRPG GATEITDTYL DGRIRSITGT GVVSQYYTYG VNADGSQWTR VDIGSPASDR
YEITTYDMAG NMIRTEKPGY TGTQATENTY DVTGRLIATS APGLADTLYE YDELGNMVRS
GLDVNDNGVL DDGSSDRIQE SVTQYSNDGT DWWQETTGKI FAVTGSSTPT TTGIQKTRLT
GLGANGLVNE TVSTDINGNQ TVARTVIDPA TQTVTQTVDY PDASFNEVTV TTNGLLQSRQ
SKTGVTTTFS CDGLGRRTGA TDSRTGTTVT HYNSLGQVDY VEDAAGNRTT FIYDAAGRRE
TETNVRGKTI RYAYNSLGQL TYKWGSAAEP VKFVYDAYGQ MIQMHMFRNG SGWDGTEWPS
GSTGDPDITT WTYQPSTGLL TAKTDDEAKS TAYTYTAANR LATRTWARDN GTLVTTYTYD
LNTGELTGID YSGTTPDVAY AYTRAGQMYT VDDVVGTRTF AYNSALQPVT ETIDGASGGL
YSKTITRTYE TSGVVGRPTG LSLTGYSVAY GYEPSTGRFA GVTWNTGAGE KTATYAYVAD
SDFVDTLTME NLVTDFVYEP NRDLKTQVRH TFGGADIAQY DYTYTALGQR KTMDLTPDLP
DTLVEATTTY TPDNLNQYDA IETGGVTDNP VYDDDGNLTH QQGMVYTWNA ENRLISVEPE
TPTEGNTKLA FVYDYMGRRV KKAVYTFSAG SYQLSAASLF VYDGWNLIQE LDGTGAVQKS
YVWGLDLSQS LQGAGGVGGL LAMTDGVNTY LYCHDANGNV GRMVSAADGT VAAAYEYAPF
GGLIHKSGVM ADENVFRFST KYWDGESGLY EYGLRYYDPE TGRWISRDPV GESGGLNLYS
FVMNDPTNFF DLLGLVQVGG SEGYSSDSMY IDITWYKPKS LYLLFKCKGC PDVNEAPVAG
RTVDIDYDKS NFKVETIIKY VLKIVSGGED ADLFWTYNRE KRYYSSLPGE AKKDIEIGRP
CWVKISCEVN CECSCGGDAC HSWKTRWGDK WISGRVTTSM NWGLGPKVCE VSDFRLDAKK
RQCRQEAKGK CKSCL
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