| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2003 |
|---|
| Symbol | |
|---|
| ID | 5694843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 2425210 |
|---|
| End bp | 2426280 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641264601 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_001529884 |
|---|
| Protein GI | 158522014 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00153551 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT GGACATATGG TCTTTTGATT ATGGTGCTGG GGATGGTTCT TTTATGCGCC
TGCGGCCAGG GGCAGGATCA GGCAGCGGCA CCCCAGGCGC CGGAACAGGT CGCGGCGCCG
GAGGCACCCG AAAAGGCCAT CGAACTGTCT TACAGCATCT TTTTCCCGCC CACCCATGAG
CAGTGCAAGG CCGGTGAGGC ATGGGCAAAG GAGGTTGAAA CCAGGACCGG CGGCGCGGTC
AAGATCAATA TTTTCCCCGG CGGCACCCTG ACCAAGGCCG ATGCCTGCTA TGACGGCGTG
GTCAGCGGTA TATCCGACCT GGGCATGTCC TGTTTTGCCT ACACCCGTGG CCGGTTTCCG
GTGATGGAGG CGGTTGACCT GCCCCTGGGC TATGCCAGCG GCACGGTGGC CACCCGGGCC
GCGGACGCCT TTTACAGAAA GATGCAGCCC GAAGAGCTGA ACGATGTCAA GGTGCTGTAC
ATTCATGCCC ATGGCCCCGG CCTGCTGCAT GCAAAAAAAC CGGTGACCTC CTTAGAAGAG
ATGAAGGGTC TCAAGGTCCG CTCCACCGGC CTGAGCGCCA AGGTGGTGGA GGCCCTTGGC
GGCGTGCCTG TGGCCATGTC CCAGGGCGCC ACCTACGAGG CCCTGCAGAA GGGCGTGGTG
GAGGGCACCT TTGCTCCCAT TGAGACCCTT AAAGGGTGGC GCCAGGCCGA GGTGATCAAA
CACACCACCG ACTGCCGGGA CATCGGCTAT ACCACGGCCA TGTTCGTGGT GATGAACAAG
GATAAATGGA ACGCGCTTCC AGAACATATC AAGCAGGTGT TTGACGCGGT CAGCGCCCAA
TGGGTCGGCG TCCACGGCAA GGTATGGGAC GATGTGGATG TGGAAGGCCG CAACTACACC
CTGGAGCTGG GCAACACGAT TACGCCGCTG AGCGACGAGG AAAACACCCG ATGGGTTCAG
GCGGTGGAAC CGGTGATTCA CGATTATATT ACTCAGGTTA ACCAGAAGGG AGTGGACGGT
GCTGCCGCGG TGGACCAGCT TCGCGCCCTG ATCGCCGGTT TTAACGAGTA G
|
|---|
| Protein sequence | MKKWTYGLLI MVLGMVLLCA CGQGQDQAAA PQAPEQVAAP EAPEKAIELS YSIFFPPTHE
QCKAGEAWAK EVETRTGGAV KINIFPGGTL TKADACYDGV VSGISDLGMS CFAYTRGRFP
VMEAVDLPLG YASGTVATRA ADAFYRKMQP EELNDVKVLY IHAHGPGLLH AKKPVTSLEE
MKGLKVRSTG LSAKVVEALG GVPVAMSQGA TYEALQKGVV EGTFAPIETL KGWRQAEVIK
HTTDCRDIGY TTAMFVVMNK DKWNALPEHI KQVFDAVSAQ WVGVHGKVWD DVDVEGRNYT
LELGNTITPL SDEENTRWVQ AVEPVIHDYI TQVNQKGVDG AAAVDQLRAL IAGFNE
|
|---|
| |