| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2001 |
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| Symbol | |
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| ID | 5694841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2423382 |
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| End bp | 2424683 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641264599 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001529882 |
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| Protein GI | 158522012 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.122119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCCA CACTGATCGG CGTTATCGGC ATTTTCGCCC TGTTTACCCT GATCTTTTCC
CGTATGCCCA TCGGCTTTCT CATGGCCATG ATCGGTTTTG TGGGATTCGG CGTCATCGTC
TCTTTTGACG CCTCCATGAA TCTGGTGGTC AAGGATCTGT TTGCCGTTTT CGGTTCCTAT
GATCTGACCG TGATTCCCCT GTTTGTGCTG ATGGGGCAGG TGGCCTTTCA CGCGGGCATC
AGTTCCCGGC TGTTTGACGC CGCCTACAAA AATATCGGGC ACCTGCCCGG GGGGCTGGCC
ATTGCCACCA TCGGAGCCTG CGCCGCCTTT GCCGCCATCT GCGGTTCCAC CAACGCCACT
GCCGCCACCA TGGCCGCCGC CACCCTGCCG GAGATGAAAC GCTACAACTA CCGGATTACC
CTGGCCACCG GGGCCGTGGC CGCCGGCGGC AGCCTGGGCA TCCTGATCCC ACCCAGCGTT
ATTTTTATTG TGTACGGCAT TCTCACCGAA CAGTCCATCG GTGAGCTTTT CCTGGCCGGC
ATTCTGCCCG GCCTGTTGCT GACCGGGCTG TTTGTGGTCA CCATCCTGGT GTGGGCCACG
ATTCAGCCGG ACCTGGGCCC CCCCGGCCCC CGGACCACGA TTCGGGAAAA GGTCGCCTCC
TTTTCCGGCG TGTTTGAAAC GATCCTGATC TTTTTTCTGG TGATGGGAGG TCTGTTTGCC
GGCATCTTCA CGCCCACCGA GGCCGGCGCC ATCGGCGCCT TCGGCACCAT CGTCCTGGCA
GTGGCCCGGC GAAACCTCTC TTGGAAGGGG TTTGTGGCGT CCCTGTTCGA GACCACCCGG
ATCAGCTGCA TGATCCTGGT GATCGTGGCC GGCGCAACGA TTTTCGGCCA TTTTCTGGCC
ATTTCCCGCA TTCCGTTTGA TATTGCCAGC TGGATATCCG GGTTTGCACT GCCCCCTGCG
GTGATCATTC TGCTGATCAT TCTGGTTTAC CTGATCGGCG GCTGCTTTAT CGATTCTCTG
GCCCTGATCA TGCTGACCAT TCCGATTTTT TATCCGGTTA TTGTTCAGTT CGGCCTGGAT
CCGGTCTGGT TCGGGGTTAT CATCGTGCTG GTGACCCAGA TCGGGGTGAT CACGCCGCCG
GTGGGCATCA ATGTTTACGT GGTCAGCGGC GTGGCCAGGG ACGTACCCCT GGAGCTGATC
TTTCGCGGCG CGTTTCCCTT TCTGCTGGCC ATGGTGGCCG GCACCCTGCT GCTGATCGCT
TTTCCGCAGA TCGCGCTTTT TCTACCCGGC CTGATACGGT AA
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| Protein sequence | MTPTLIGVIG IFALFTLIFS RMPIGFLMAM IGFVGFGVIV SFDASMNLVV KDLFAVFGSY
DLTVIPLFVL MGQVAFHAGI SSRLFDAAYK NIGHLPGGLA IATIGACAAF AAICGSTNAT
AATMAAATLP EMKRYNYRIT LATGAVAAGG SLGILIPPSV IFIVYGILTE QSIGELFLAG
ILPGLLLTGL FVVTILVWAT IQPDLGPPGP RTTIREKVAS FSGVFETILI FFLVMGGLFA
GIFTPTEAGA IGAFGTIVLA VARRNLSWKG FVASLFETTR ISCMILVIVA GATIFGHFLA
ISRIPFDIAS WISGFALPPA VIILLIILVY LIGGCFIDSL ALIMLTIPIF YPVIVQFGLD
PVWFGVIIVL VTQIGVITPP VGINVYVVSG VARDVPLELI FRGAFPFLLA MVAGTLLLIA
FPQIALFLPG LIR
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