Gene Dole_1985 details

Gene Information

• Locus tag: Dole_1985
• ID: 5694825
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 2401874
• End bp: 2402566
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 641264583
• Product: ribonuclease H
• Protein accession: YP_001529866
• Protein GI: 158521996
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0328] Ribonuclease HI

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00000102134
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCACTG ACACGCCGGG CTGGAAGCGG ATGGCCTTTA AAAACAACAA GGTGTGGGTT 
GAAACCGGCC CGGCCGGTGA CCTGCTGGTC CAGGACGGAA AGGTGCGTAT CAAGTATCAG 
CTGGATCAGC CCCATGAGTA CCGTGTGCAT AAGGAAAGCC TTCGCCCCCT TGACCGGCCT 
GGCGCGGCCC CGGCAACATC AACGGTAAAA TCACCGGCAA AAAAGAAGCC CGTCCCGGCA 
AAAAATTTTG CGGGAAATGG AACAGAGGTA GCGGCGGCAA TGGCGGAAAA AGACGCCATT 
CAGGTCTTCA CCGACGGGGC CGCCTCGGGC AATCCCGGCC CGGCCGGCAT CGGCGTGCTG 
CTGATATACG GCAACAGCCA AAAAACCATC TCCCGCTACA TCGGCCACGC CACCAACAAC 
ATCGCCGAGC TCAAGGCCAT TGAAGCGGCC CTGCTGGAAA TCAAAAACAA AAAACTGCCG 
GTGCGCCTTT TCACGGACAG CGCTTATTCC CTGGGCGCGC TCACCCTGGG CTGGAAGGCG 
CAGAAAAACG TGGAACTGAT TGCCGGCATT CAAAAGCTGA TGCGAACATT TTCAGACCTG 
AAAATTTTCA AGGTCAAGGG TCATGCCGGC ATGGCGGAAA ACGAGACAGC GGACCGGCTG 
GCCACCGAGG CGATTCAGAA GCTTGCGGAA TAA 

 

Protein sequence

MSTDTPGWKR MAFKNNKVWV ETGPAGDLLV QDGKVRIKYQ LDQPHEYRVH KESLRPLDRP 
GAAPATSTVK SPAKKKPVPA KNFAGNGTEV AAAMAEKDAI QVFTDGAASG NPGPAGIGVL 
LIYGNSQKTI SRYIGHATNN IAELKAIEAA LLEIKNKKLP VRLFTDSAYS LGALTLGWKA 
QKNVELIAGI QKLMRTFSDL KIFKVKGHAG MAENETADRL ATEAIQKLAE