| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1939 |
|---|
| Symbol | |
|---|
| ID | 5694779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 2342548 |
|---|
| End bp | 2343321 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641264537 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001529820 |
|---|
| Protein GI | 158521950 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGAAA ACAACCACCG CAGACCCCGC AAAAAACCGA GGCAGGAAAG AGCAAAAGTT
ACGGTGGATG CTATTTACGA GGCCGCGTTA CAACTGTTTG TAATAGATAA CTACAGCGCC
GTGACAACCG ACAAGATAGC CGAACGGGCC GGGGTTTCCA TCGGTACACT TTATCAATAC
TTTCCCAACA AGGAATCGAT CCTGGTCGGT CTGTGGGACC AGGTGTTTGA TGCTGTCGTT
ATCGGAGATA CCACCCATTC TCTTCATGGA TCCGAAATTA CAGAAGAGGA AAAAGTCCCG
GAACAGGATG GAAGTGTCGC CGACGAAAAT GGCTTGAAGC GTATCGCCGG TGTATATATT
GGTACCTATA CCGGTGTGTT GGCAGGAACT ATCGAGGGGG CGATTTTTAA TATTAAACAT
CGGTTTAAAT TTCGAAGCAC GTGGCGGTTT GATCTGGATG AGGAAAGCGT AAAACTTGTC
CTCGAGAACC TTCCGGTTAT TGAGCGAATC GCCGGTACAG GAACCCTGGA CCCCCCCACC
GGTTTTATGA AAATGGTTTT TCAGGCACCA ATCATGGGGA AGCTGCCGGG AACCGGCTGG
TTTGATGGAG GCAACTTCTC CTTTTCTATC CCCCGCGTTG ATTTTGCAAT ATCAGGGGTC
TTTGCCTCGG ACGGTTTGGC TTCAGGTACC TGGAAATTTA ATATTTCGTT TGTCGTCTTA
AAAGTGTCTG CAAAAGGAGA CATGTCCGGC GAATTGAAAA GGACCAACGC TTAA
|
|---|
| Protein sequence | MSENNHRRPR KKPRQERAKV TVDAIYEAAL QLFVIDNYSA VTTDKIAERA GVSIGTLYQY
FPNKESILVG LWDQVFDAVV IGDTTHSLHG SEITEEEKVP EQDGSVADEN GLKRIAGVYI
GTYTGVLAGT IEGAIFNIKH RFKFRSTWRF DLDEESVKLV LENLPVIERI AGTGTLDPPT
GFMKMVFQAP IMGKLPGTGW FDGGNFSFSI PRVDFAISGV FASDGLASGT WKFNISFVVL
KVSAKGDMSG ELKRTNA
|
|---|
| |