| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1878 |
|---|
| Symbol | |
|---|
| ID | 5694718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 2276222 |
|---|
| End bp | 2277049 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641264476 |
|---|
| Product | cyclic nucleotide-binding protein |
|---|
| Protein accession | YP_001529759 |
|---|
| Protein GI | 158521889 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.116046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATG GTCGCAACGA AAAAAATTCA GAAGAACGCT TGAAAATGGA AAACGAGGAC
CTGGGCCGGC CTGATCCTGA GCTGGAGCTT GCTCCGGAGG ACATTGTGCC TGTTGCGAAT
GAAAGCGCGG GGCCGTCCGA AACGACGGAT GGTTTTCTGT TGGACCAGTC CGATTTTATC
GGTATGGACG GCACCCCGGA CCCGCCATCC CTGTTTGACG GTCCCGTACC GGCGTCTGGC
GGCAGCAAAA CCGAAAATGA TGGGCCCGCG CATATCATTG ACCAGTCCGA CCTGATCACT
ATGGAGGAAA AAGAGGACCA TTCCTCCCTG CCCGGCGGGT TTGCCACCCG ATCATTTGAG
CCGGGTGATG TGATTTTCAG GGAAGGCGAC CCCGGCGACG CGGCCTACCT TATTCTAAGC
GGACTGGTAA AAATCACCCG GCAGCAAAAA AAAACGCGAC TGGTGCTCAA CCAGTTGGGC
GCGGACCAGA TTTTCGGAGA GATGGCAATG ATTACCGGCG AGCCCAGGAC AGCCACGGCA
ACCGCCCTGG AGCCTACCGA AGTCTTCGTG ATTACAGAAG AGCGGTTGAA CGAAAACTTA
AGTCAACATC TGGCCATTGT AAAAAACCTG ATTGACCAGT TGATTGAGCG GATGAAACAG
TTGCTCCAGC ACCAGTCAGC CATGATGGAA AAAATGGCCC GGTCCGCTGC CGGGGCAAAA
CGGATGGAAA AGCTCAAGGC CCTGGCCGCA CAGTATGAAA AGACGGTGCC GCCGGAAAAG
CTGGACAAGG GGCTAAAGGC TCTGCTGAAA ATGGTTCAGG AGATCTGA
|
|---|
| Protein sequence | MDDGRNEKNS EERLKMENED LGRPDPELEL APEDIVPVAN ESAGPSETTD GFLLDQSDFI
GMDGTPDPPS LFDGPVPASG GSKTENDGPA HIIDQSDLIT MEEKEDHSSL PGGFATRSFE
PGDVIFREGD PGDAAYLILS GLVKITRQQK KTRLVLNQLG ADQIFGEMAM ITGEPRTATA
TALEPTEVFV ITEERLNENL SQHLAIVKNL IDQLIERMKQ LLQHQSAMME KMARSAAGAK
RMEKLKALAA QYEKTVPPEK LDKGLKALLK MVQEI
|
|---|
| |