| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1705 |
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| Symbol | |
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| ID | 5694543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2045873 |
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| End bp | 2049397 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641264301 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001529586 |
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| Protein GI | 158521716 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCCAAA ATCAAGAAAA AAAAATTCTC CCCGTTCTGG TCGACCGGTT GGAAACCGGT
GCGGGCGAGG TGGTGTGTGC CGGCGTGGGC AAGGGGGCCG ACGCCTTTAT GGTCTCCCGT
ATCGGCCAGA CACTGAATGT CCCCGTGCTG GTGGTCACCG CTTCCGCAAG GGAAGCCCAG
CGGTTTACCG AAGACGCCCG GTTCTTTCAG CCCGCCGATG CCCGGGCGGA GGTGGCGCTG
TTTCCCTCCT ACACGGTGAT GCCCTATCGC CCGGTGGCCT ATCACAACCG GACCGCGGCT
GAGCGCATTC AACTGCTCTA CGGCATGTCG GAAGGACTTG CCCCGGCCGT CCTTGTCCTG
GCCGTTGACG CGCTGTTGCA GAAAACCATT CCTCCCGGGG ACCTGTGTGA GTTCGCCCAG
ACCGTAAGCG AAGGGGAAAG CCTTGACCCC ACCGCGCTGG CGGAAAAGCT GGTTGCCGGC
GGCTATACAC GGACCGCCAT CGTGGAGGAG CCCGGTGACT TTTCGATCCG CGGCGGTATT
GTCGATCTTT TTTCCCCGTT TCACGAGGCC CCGGCCCGTA TCGATCTGTT CGGCGATACC
GTGGAGTCGA TCCATTTTTT TTCCCCGGTC ACCCAGCGGC GGGGCCGTCC CACCAGCGGC
ATCACCCTGC TGCCGGCCAG AGAGACTGTT CTGGCAAAAG ACCGTATCGG CCGGCTGATC
GCCGCGGTCA AAAAACGGTC CGCGGAGTTA AACCTTCCGG TCTCCGTAAG CAGGGACATC
ATCGACCGGA TGGAGCAGGG GACTGACACG GAAGGCATGG AAAGCCTGAT GCCCCTGGTG
TACGAGACCC CGGCCACGCT TTTTGACTAT CTGCCGGGAA AAACGCTTCT GGTCATGGTG
GACCCCGGCA TGATTGCCGA AAAAGCTGAA AACCACGGGC GACTGGCAAC CGAACTTTAC
GAGACCGCCA GGGAAGAGGG AAGGTGGTGT GTGCCGCCGG ATGCCCTGTA CCTCGACTGG
CAGGCAGTGC AAAAAGAGGC ATTCAAAAAG CCGCTGCTCT CTTTTCCCGT GCTGCCGGTC
TCTGCCACGC CGGAGGATGG TGACAACACG CCTGTGGTGG AAACGGCGGG GGTGACGGAC
AACAGCGCGG TCACCCTGAT GCTGCGCACC CAGCCCCGGG ACACCGATAC CGTACTAACG
CCCCTGCTGT CATGGATCGA AGAAAACCGC GGCCTGGGCT GCGTTTCGGT CATCGCCTGC
GGGGGCCGGG CCCAGGTGGA CCGAATGGCC TATTTTCTTA CATCCCACCG GGTGCCCCAT
GAAAGTTTAG ACGCCTTTTC AAGCATGGGC CGGGGCAGCG ACACGGTCTG CCTGGTATCC
GGGCAGCTCT CCGCGGGGTT CCGGTTTGCC GCTGAAGGGC TGGCCGTGAT CACCGACACT
GAAATCTTCG GCCGGGTCCG GCACCGGTCT TCGGCCGGCA AGAAGGGGGC CCGGGATGTT
TACCTGGACC TGGAAACCCT GAAGCAGGGG GACCTGGTGG TCCACGTGGA CCACGGCATC
GGCCGCTACG AAGGTATTCG AAAAGTGACG GTGGAAGGGA TTGCCAACGA TTTTCTGCTG
CTCAGTTACA GGGACGGAGA CCGGCTCTAT CTGTCCGTGG ACCGGATGGA CATGGCCCGG
AAATACGTGG GGGCCGATGA TGCCGAAGCC CCCCTGCTGG ACAAGATGGG GGCAAAAACC
TGGGGCCGGG TCAAGGCAAA GGCCCGCAAG GAAGCGGAAA AGATCGCCAA AGAGCTGCTG
GACCTTTACG CCCGGCGCCG GGTGCAGCAG GGCCATGGTT TCCATCCGCC GGGCCAGTGG
TTTTCCGATT TTGAGGCCGG GTTTGACTTT GAGGAGACCG ATGATCAGCT CAAGGTGATC
AACGAAGTCC TTTCAGACAT GGCCTCATCC ACACCCATGG ACCGCCTGGT CTGCGGGGAC
GTGGGATACG GCAAGACGGA AGTGGCCATG CGCTCCTCGT TTATGTGTGT CTGCGACGGG
TTTCAGGTCG CGGTGCTGGT ACCCACCACG GTACTGGCGG AACAGCATTT TGCCACCTTT
TCCCGGCGTT TTGCCGGCTA TCCCTTCAAC ATTGCCTGCC TGAGCCGTTT CAAGACCCCG
GCCCGGCAGA AACAGATTGT TGCCGACCTC AAGGAGGGCC GGGTCGATAT TGTCATCGGC
ACCCACCGGC TGCTGTCCAA AGATGTGGCC TTCAAACAGC TGGGGCTGGT GATTCTGGAT
GAGGAGCAGC GCTTCGGGGT GAAGCACAAG GAGACCCTGA AAAAAATGCG AACCACGGTG
GATGTGCTCT CCCTCACCGC CACGCCGATT CCCCGGACCC TTCACATGTC CCTGTCGGGC
ATGCGGGACA TCAGCGTGAT CACCACGCCG CCGGAGCACC GCAAGGCCAT CAAGACCTAT
ATTTCGGAGT TTGACGATGC CATCATTCGA ACCGCCATTC GCAAGGAGCT GGAGCGGGGC
GGGCAGATCT ATTTTGTTCA CAACAATATT CACAAGATCG CGTTTATCGC CGACCATCTT
AAAAAGCTGG TGCCCGAGGT AAGGCTGGGC ATCGTCCACG GCCGGCTGGA CCAGAACACC
CTGGAGACCT GCATGATGCA GTTTGTCAAC CGGGAGATCG ACATGCTGGT CTGCACGCGC
ATCATAGAGT CCGGCATCGA CATTCCTTCG GCCAACACCA TCTTCATCAA CCGGGCCGAT
ATGTTCGGGC TGGCCCAGAT TTACCAGCTT CGGGGCAGGG TGGGCCGGTC CGATGAACAG
GCCTATGCCT ACCTGTTTAT TCCCAGGGAA AGCGCCCTGG GAAAAGACGC CCGCAAGCGG
CTCAAGGTGC TGATGGAACA CAGCGACCTG GGGTCGGGTT TTCAGATCGC CATGAACGAC
CTGAAGATAC GCGGCGGCGG GGCGGCCCTG GGAGTGTCCC AGTCCGGCCA TATCACGGCG
GTGGGATATG ACATGTTCCT GCAGCTGATG GAGCAGGCGG TTGCCGAGTT AAAAGGGGAG
CCTGTGACCG AAACCCTCAA CCCGGAAATC AACATTCCGG TTTCCTCCTT TCTCTCGGAA
GCTTATATTT CGGATATCGA CCAGCGCATG GCCATCTATC GCCGGCTGTC CAGGGTCACG
GAAACTCGTG AGATCACCGC CGTTAAAACA GAACTGGAGG ACCGGTTCGG CCCTCTGCCG
GCGGAAGCGG AAAACCTGCT GTTAAAAATC ATGTTAAAAA CCATGGCCGC CGGTATGGGG
GTCAAGCGGC TTGACCTTGC CGACACCCAG ATGCACCTGC GCTTTTCAGA CGACCGCCTT
CCCGATGCAG CCGCCGTTGA CGTCCTGGCA CGGGAAAATC CGGTTACGGT AAAAATCGTC
CCTCCGGACG GCGTTTTCAT CACGTTTACC GGGAAAAAGG GCCGGGGCGC CATTGGCGCG
GCCAAAAACA TCTTGAAAGC CCTGGCCGGG CGTGTTAACT GTTAG
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| Protein sequence | MVQNQEKKIL PVLVDRLETG AGEVVCAGVG KGADAFMVSR IGQTLNVPVL VVTASAREAQ
RFTEDARFFQ PADARAEVAL FPSYTVMPYR PVAYHNRTAA ERIQLLYGMS EGLAPAVLVL
AVDALLQKTI PPGDLCEFAQ TVSEGESLDP TALAEKLVAG GYTRTAIVEE PGDFSIRGGI
VDLFSPFHEA PARIDLFGDT VESIHFFSPV TQRRGRPTSG ITLLPARETV LAKDRIGRLI
AAVKKRSAEL NLPVSVSRDI IDRMEQGTDT EGMESLMPLV YETPATLFDY LPGKTLLVMV
DPGMIAEKAE NHGRLATELY ETAREEGRWC VPPDALYLDW QAVQKEAFKK PLLSFPVLPV
SATPEDGDNT PVVETAGVTD NSAVTLMLRT QPRDTDTVLT PLLSWIEENR GLGCVSVIAC
GGRAQVDRMA YFLTSHRVPH ESLDAFSSMG RGSDTVCLVS GQLSAGFRFA AEGLAVITDT
EIFGRVRHRS SAGKKGARDV YLDLETLKQG DLVVHVDHGI GRYEGIRKVT VEGIANDFLL
LSYRDGDRLY LSVDRMDMAR KYVGADDAEA PLLDKMGAKT WGRVKAKARK EAEKIAKELL
DLYARRRVQQ GHGFHPPGQW FSDFEAGFDF EETDDQLKVI NEVLSDMASS TPMDRLVCGD
VGYGKTEVAM RSSFMCVCDG FQVAVLVPTT VLAEQHFATF SRRFAGYPFN IACLSRFKTP
ARQKQIVADL KEGRVDIVIG THRLLSKDVA FKQLGLVILD EEQRFGVKHK ETLKKMRTTV
DVLSLTATPI PRTLHMSLSG MRDISVITTP PEHRKAIKTY ISEFDDAIIR TAIRKELERG
GQIYFVHNNI HKIAFIADHL KKLVPEVRLG IVHGRLDQNT LETCMMQFVN REIDMLVCTR
IIESGIDIPS ANTIFINRAD MFGLAQIYQL RGRVGRSDEQ AYAYLFIPRE SALGKDARKR
LKVLMEHSDL GSGFQIAMND LKIRGGGAAL GVSQSGHITA VGYDMFLQLM EQAVAELKGE
PVTETLNPEI NIPVSSFLSE AYISDIDQRM AIYRRLSRVT ETREITAVKT ELEDRFGPLP
AEAENLLLKI MLKTMAAGMG VKRLDLADTQ MHLRFSDDRL PDAAAVDVLA RENPVTVKIV
PPDGVFITFT GKKGRGAIGA AKNILKALAG RVNC
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