| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1582 |
|---|
| Symbol | |
|---|
| ID | 5694419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1883079 |
|---|
| End bp | 1885382 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641264177 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001529463 |
|---|
| Protein GI | 158521593 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG3071] Uncharacterized enzyme of heme biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000189935 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT CAAGACGATT CATCTGTATT GTCGGCGTGG CCCTTCTGCT GGCGGTCATG
GGCTGCCAGA CGGAGGACAC CTCCCCCGGC GCCCTGGTGC AAAAGGGAAA CAACCTCTTT
TTCAAAGGGG ACTACCGGCA GGCGGAACAG GCCTACCGGC AGGCCATTGA TACCGAGCCC
TCCCTTGTTT CTGCCTGGAT GGGGCTTGCC GAGACCCGTC TCAAACTGGG CGATGTAAAA
GAGGCCACCG ATGCCTATGC CCGGCTGCTT GAGATCGATC CCGGTCATGT CCCTGCCCGG
CTGAACATGG CCCGGTTTGA TCTTCTCTCC AACCGGCTGG AAGCCGCGGA ACAGGGAGTG
CAGCAGGTGC TGTCCGTGGA ACCGGCCAAC ATTGACGCCC TTTTTCTGTT TGCCGAAATT
TGTGAGAAAG AGGGCCGCTT CAAACAGGCC GAACAGCTTT ATGGCCGGGT ACTTTCCGTT
CAGAGAGACA ATACCGCCGC CCTGTTGCGG CTTGGCGCCA TTTTCGCGAA GACCGGTGAT
ACGGTTCAGG CCAGGGCGCA TCTGGAACAG GCGGTGGCCG TGGACCCGTC CGCCATAGAC
CCCCGCCTGG TGCTGTTTAA TTTTCATATG AGCCGAAAGG ATTATTCGGC TGCTGAAAAG
GCGCTGGCCG AGGCGGTGGC GGCCCATCCG GAGAACCCGG ATTTGCATAT CCTGCTGGGT
AATTTTTATT TTTCCCGAAA ACAGCCGGAC CAGGCGGAAC AGGCTTTTTT AAAGGCTGTT
GAGACAGGCG GGGATCACCT GCCGGCTCGT TTGGCCGCCG CCAATTTTTA CCGGGCTGTG
GGCAGGCCGG ACAAGGCCCT GGAGATGTAC CGGTCAGCCC TGGCGGTCAA CCCTCGCAGC
CTTCGTGCCC GGCATGCACT GGCAGGGTTT TACCTGGAGA ATAATCTCCT GGATGCGGCT
GCAAAGGAAG TGGAAACCAT TTTGCAGGCA AACGACACAT ACCTCCCGGC CCGCCTGCTC
AAAATCCGGT TGCTGATTGT CCGACAGGAG TATGACCGGG CCATCTCCCT TTGTGATGCC
TATCTGACGG AAAACCCGAC CTCCAGCGAC CTTTATTATG CCAAAGGCCT GGCCTTCTGG
CACAAGGAGG ACCTGGTTTC CGCTGAAAAG GCCGTTTCTC GTGCGATTGC CCTTTCACCG
GGCAATATCA GCGCCCGGCT TCGGCTGGCC GATATCTATC TGAAAATGGG TGAAACGGAA
AAGGCCCAGG CAGTTAACCG GGAATTGCTG GCTTTTCTGC AGGAGCACCT GAACCTGGAG
GTCGTGCCCG CCGGCGCGGT CGATCCTGAA AGGACCCGGC CCCGGGGGCT GGACTCTTTT
GGGTCTCTGC TGGACATCGC CGACGCGCAT CCCTTTGGTG ATGCTGAACG CCTGAGCGGC
CTGATGGAAA GATATGAACA GACCATTGAA GGATTTGAGG CGGCATTGCG AAAAAATCCC
CTTCAGGCCG GGCTGTTTGA AAATATCGTG TTTCTTAAGG GTGTGAAAGG AGAGTACGAC
AAGGCCATCG ATCGATGCAA CCAGCGGGTG GCCTCGCTTG AGCAGATGGC CGATATCGCT
CCGGAACAGC GGCAGTCCCT TATGGCGGCT GTCTATGCCC TTAAGGGGGA CCTGTATCTG
GCCAAGGGTG ATCGGGAAAA GGCAAAAACC GCCTTTCAGC AGGCTGTTTC CATGGACCCC
GATACCCTGA AATCCTATTT TGCTTTGGCC AGGCTTCATA TTCTGGAAAA GGACCTGGAC
GGCGCCATCT CGCAGTATCG TACCATCCTG AACAGGCATC CTCAGCAGGC CGGGCCTCAT
ATGCTGCTGG GCGTACTTTA CAAAATGAAG GAGGCACCGG AACAGGCGGA ATATCATTAC
CGGGCCGCCC TGGACGAAGA CCCTGAACTG GCCCAGGCCG CCAACAACCT GGCCTACCTG
CTTTCGGAAA ATCCGGACCG GCTGGACGAA GCCCTGGATT TCGCCCTGCG CGCCCGGTCC
CAGGCCCCGG AGGATCCCTA CATCATGGAT ACGTTGGGCT GGATTTACTA CCGGATGGAG
CGGTATGACA AGGCCCTTGA GCATTTACAG GCGGCGGCCG ATCGCATTCC CGACAATGTC
ACGGTGAACT ATCACCTTGG CATGACCTAC TACCGGCAAG GCCAGTTTGA GCAGGCCCGT
ATTTTTCTTG ACAGAGCATT GAGTCTCAAC GGGAAGTTTT ATGGAGCAGA TGAGGCCCGA
ACCCTTCTGG ATGAGCTGAT GTAA
|
|---|
| Protein sequence | MKNSRRFICI VGVALLLAVM GCQTEDTSPG ALVQKGNNLF FKGDYRQAEQ AYRQAIDTEP
SLVSAWMGLA ETRLKLGDVK EATDAYARLL EIDPGHVPAR LNMARFDLLS NRLEAAEQGV
QQVLSVEPAN IDALFLFAEI CEKEGRFKQA EQLYGRVLSV QRDNTAALLR LGAIFAKTGD
TVQARAHLEQ AVAVDPSAID PRLVLFNFHM SRKDYSAAEK ALAEAVAAHP ENPDLHILLG
NFYFSRKQPD QAEQAFLKAV ETGGDHLPAR LAAANFYRAV GRPDKALEMY RSALAVNPRS
LRARHALAGF YLENNLLDAA AKEVETILQA NDTYLPARLL KIRLLIVRQE YDRAISLCDA
YLTENPTSSD LYYAKGLAFW HKEDLVSAEK AVSRAIALSP GNISARLRLA DIYLKMGETE
KAQAVNRELL AFLQEHLNLE VVPAGAVDPE RTRPRGLDSF GSLLDIADAH PFGDAERLSG
LMERYEQTIE GFEAALRKNP LQAGLFENIV FLKGVKGEYD KAIDRCNQRV ASLEQMADIA
PEQRQSLMAA VYALKGDLYL AKGDREKAKT AFQQAVSMDP DTLKSYFALA RLHILEKDLD
GAISQYRTIL NRHPQQAGPH MLLGVLYKMK EAPEQAEYHY RAALDEDPEL AQAANNLAYL
LSENPDRLDE ALDFALRARS QAPEDPYIMD TLGWIYYRME RYDKALEHLQ AAADRIPDNV
TVNYHLGMTY YRQGQFEQAR IFLDRALSLN GKFYGADEAR TLLDELM
|
|---|
| |