Gene Dole_1582 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1582 
Symbol 
ID5694419 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1883079 
End bp1885382 
Gene Length2304 bp 
Protein Length767 aa 
Translation table11 
GC content57% 
IMG OID641264177 
ProductTPR repeat-containing protein 
Protein accessionYP_001529463 
Protein GI158521593 
COG category[H] Coenzyme transport and metabolism
[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF
[COG3071] Uncharacterized enzyme of heme biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000189935 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACT CAAGACGATT CATCTGTATT GTCGGCGTGG CCCTTCTGCT GGCGGTCATG 
GGCTGCCAGA CGGAGGACAC CTCCCCCGGC GCCCTGGTGC AAAAGGGAAA CAACCTCTTT
TTCAAAGGGG ACTACCGGCA GGCGGAACAG GCCTACCGGC AGGCCATTGA TACCGAGCCC
TCCCTTGTTT CTGCCTGGAT GGGGCTTGCC GAGACCCGTC TCAAACTGGG CGATGTAAAA
GAGGCCACCG ATGCCTATGC CCGGCTGCTT GAGATCGATC CCGGTCATGT CCCTGCCCGG
CTGAACATGG CCCGGTTTGA TCTTCTCTCC AACCGGCTGG AAGCCGCGGA ACAGGGAGTG
CAGCAGGTGC TGTCCGTGGA ACCGGCCAAC ATTGACGCCC TTTTTCTGTT TGCCGAAATT
TGTGAGAAAG AGGGCCGCTT CAAACAGGCC GAACAGCTTT ATGGCCGGGT ACTTTCCGTT
CAGAGAGACA ATACCGCCGC CCTGTTGCGG CTTGGCGCCA TTTTCGCGAA GACCGGTGAT
ACGGTTCAGG CCAGGGCGCA TCTGGAACAG GCGGTGGCCG TGGACCCGTC CGCCATAGAC
CCCCGCCTGG TGCTGTTTAA TTTTCATATG AGCCGAAAGG ATTATTCGGC TGCTGAAAAG
GCGCTGGCCG AGGCGGTGGC GGCCCATCCG GAGAACCCGG ATTTGCATAT CCTGCTGGGT
AATTTTTATT TTTCCCGAAA ACAGCCGGAC CAGGCGGAAC AGGCTTTTTT AAAGGCTGTT
GAGACAGGCG GGGATCACCT GCCGGCTCGT TTGGCCGCCG CCAATTTTTA CCGGGCTGTG
GGCAGGCCGG ACAAGGCCCT GGAGATGTAC CGGTCAGCCC TGGCGGTCAA CCCTCGCAGC
CTTCGTGCCC GGCATGCACT GGCAGGGTTT TACCTGGAGA ATAATCTCCT GGATGCGGCT
GCAAAGGAAG TGGAAACCAT TTTGCAGGCA AACGACACAT ACCTCCCGGC CCGCCTGCTC
AAAATCCGGT TGCTGATTGT CCGACAGGAG TATGACCGGG CCATCTCCCT TTGTGATGCC
TATCTGACGG AAAACCCGAC CTCCAGCGAC CTTTATTATG CCAAAGGCCT GGCCTTCTGG
CACAAGGAGG ACCTGGTTTC CGCTGAAAAG GCCGTTTCTC GTGCGATTGC CCTTTCACCG
GGCAATATCA GCGCCCGGCT TCGGCTGGCC GATATCTATC TGAAAATGGG TGAAACGGAA
AAGGCCCAGG CAGTTAACCG GGAATTGCTG GCTTTTCTGC AGGAGCACCT GAACCTGGAG
GTCGTGCCCG CCGGCGCGGT CGATCCTGAA AGGACCCGGC CCCGGGGGCT GGACTCTTTT
GGGTCTCTGC TGGACATCGC CGACGCGCAT CCCTTTGGTG ATGCTGAACG CCTGAGCGGC
CTGATGGAAA GATATGAACA GACCATTGAA GGATTTGAGG CGGCATTGCG AAAAAATCCC
CTTCAGGCCG GGCTGTTTGA AAATATCGTG TTTCTTAAGG GTGTGAAAGG AGAGTACGAC
AAGGCCATCG ATCGATGCAA CCAGCGGGTG GCCTCGCTTG AGCAGATGGC CGATATCGCT
CCGGAACAGC GGCAGTCCCT TATGGCGGCT GTCTATGCCC TTAAGGGGGA CCTGTATCTG
GCCAAGGGTG ATCGGGAAAA GGCAAAAACC GCCTTTCAGC AGGCTGTTTC CATGGACCCC
GATACCCTGA AATCCTATTT TGCTTTGGCC AGGCTTCATA TTCTGGAAAA GGACCTGGAC
GGCGCCATCT CGCAGTATCG TACCATCCTG AACAGGCATC CTCAGCAGGC CGGGCCTCAT
ATGCTGCTGG GCGTACTTTA CAAAATGAAG GAGGCACCGG AACAGGCGGA ATATCATTAC
CGGGCCGCCC TGGACGAAGA CCCTGAACTG GCCCAGGCCG CCAACAACCT GGCCTACCTG
CTTTCGGAAA ATCCGGACCG GCTGGACGAA GCCCTGGATT TCGCCCTGCG CGCCCGGTCC
CAGGCCCCGG AGGATCCCTA CATCATGGAT ACGTTGGGCT GGATTTACTA CCGGATGGAG
CGGTATGACA AGGCCCTTGA GCATTTACAG GCGGCGGCCG ATCGCATTCC CGACAATGTC
ACGGTGAACT ATCACCTTGG CATGACCTAC TACCGGCAAG GCCAGTTTGA GCAGGCCCGT
ATTTTTCTTG ACAGAGCATT GAGTCTCAAC GGGAAGTTTT ATGGAGCAGA TGAGGCCCGA
ACCCTTCTGG ATGAGCTGAT GTAA
 
Protein sequence
MKNSRRFICI VGVALLLAVM GCQTEDTSPG ALVQKGNNLF FKGDYRQAEQ AYRQAIDTEP 
SLVSAWMGLA ETRLKLGDVK EATDAYARLL EIDPGHVPAR LNMARFDLLS NRLEAAEQGV
QQVLSVEPAN IDALFLFAEI CEKEGRFKQA EQLYGRVLSV QRDNTAALLR LGAIFAKTGD
TVQARAHLEQ AVAVDPSAID PRLVLFNFHM SRKDYSAAEK ALAEAVAAHP ENPDLHILLG
NFYFSRKQPD QAEQAFLKAV ETGGDHLPAR LAAANFYRAV GRPDKALEMY RSALAVNPRS
LRARHALAGF YLENNLLDAA AKEVETILQA NDTYLPARLL KIRLLIVRQE YDRAISLCDA
YLTENPTSSD LYYAKGLAFW HKEDLVSAEK AVSRAIALSP GNISARLRLA DIYLKMGETE
KAQAVNRELL AFLQEHLNLE VVPAGAVDPE RTRPRGLDSF GSLLDIADAH PFGDAERLSG
LMERYEQTIE GFEAALRKNP LQAGLFENIV FLKGVKGEYD KAIDRCNQRV ASLEQMADIA
PEQRQSLMAA VYALKGDLYL AKGDREKAKT AFQQAVSMDP DTLKSYFALA RLHILEKDLD
GAISQYRTIL NRHPQQAGPH MLLGVLYKMK EAPEQAEYHY RAALDEDPEL AQAANNLAYL
LSENPDRLDE ALDFALRARS QAPEDPYIMD TLGWIYYRME RYDKALEHLQ AAADRIPDNV
TVNYHLGMTY YRQGQFEQAR IFLDRALSLN GKFYGADEAR TLLDELM