| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1550 |
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| Symbol | |
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| ID | 5694387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1846529 |
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| End bp | 1849270 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641264145 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001529431 |
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| Protein GI | 158521561 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG1545] Predicted nucleic-acid-binding protein containing a Zn-ribbon
[COG3255] Putative sterol carrier protein
[COG3425] 3-hydroxy-3-methylglutaryl CoA synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGGCA TTACTTCTTA TGGCGCATTT GTTCCGCGTT ACAGACTGAG CCGCAGCTCC
ATTTTCCAGA CCATGGGATG GTTTGCCCCG GCGATCATGA TGGTCGCCCA GGGTGAACGG
TCCATGTGTA ACTGGGATGA GGATCCGATT ACCATGGCGG TCGGCGCGGG ACGGGATTGC
TTGACGGAAT ATGATAAACA GCAGATCGAC GGCCTGTACC TGGCGTCAAC CAGCCTTCCG
TTTATGGATC GCCAGAACGC CGGCATTGTA TCGACGGCGT TGAACTTAAG CGAACATATC
GCCACCGCCG ACTTCACTTC TTCCCAGCGG GCCGGCACCT CTGCGCTGAT TCACGCCGTG
GAATCGGTCA AGAGCAAGGA AAAAAACAAT GTGATGGTCA TCGGTACCGA TGCCCGGGAA
ACCAAGCCCG CCTATTTTTA TGAAATGTGG TATGGCGACG GTGCCGCCAG TGTAACCATC
GGCTCCAAAG ACGTGATCGC GGAATACAAA GGATCATTTT CGTTGACCCG TGATTTTGTG
GATCATTATA AGGGAAAAGG CCGTCGCTTT GACTATTTCT GGGAAGAGCG ATGGGTAAGG
GATGAAGGCT TTTCCAAGAT CATTCCCGAA GCGGTCAACG GCCTGTTCGA GAAAATCGGA
ATGACCGGCG ATAAGGTCGA CAAGTTTGTG TTTCCCTGCT TTTTCGCCAA GGACCGGAAA
AAAATCGCCA AGCTGTGCGG CATTGATCCG TCCAGGGTCA CTGATCCGCT GCACGAGGTC
TGCGGTGATA CCGGCGCGGC CCATGCCCTG CTGATGCTGG CCGCGGCACT GGATGACGCC
AAGCCCGGTG AAATTATTGT CGTGGCCGGT TTTGGCCAGG GGTGTGACGC CCTCTGTTTC
AAGGTAACCA AAAACATTGC CACCCTTGCG CCCAGGGATG GCGCCCACGG CACTCTTGAG
AACAAGCTCT CCATTGATAA TTATGCCAAG TTCCTGGTTT TCCGTCAGTT GATCGAACCG
GATATGGGCA TTCGAGCGGA GGCGCCGCTG CAGACGGCGT TGACGGCCCT GTATCGCAAC
CGGAAAATGT TGCTTGGCCT GGTGGGCGGC AAGTGCCGTG AGTGTGGTAC GCCGCAGTTC
CCCAAGTCCA AGGTCTGCGT TAACCCTCAC TGCGAGGCCA TGCACAGTCA GGATGATTAT
GAGTTTGCCG GCCAGCCGGC CCGGGTCAAG ACATTTACCG GGGATATGCT GTCGGTCAGT
GTGGATCCGC CCAATATTTA CGGTATGGTT CAATTTGACA ACGGCGGCCG CATGATGGCG
GATTTTACGG ATTGCAGCAT TGACGATGTC AAGGTCGGCC TGCCGGTGGA AATGGTTTTC
CGTCGGCGGG TGGTCGATCC GGAACGCAAA TTTTCGTCCT ATTTCTGGAA GGCCAAGCCC
ATTGCCGGTG CTGCCGTGGA CGAAGTGGAC AAGCTTACCA TGGACGGCCG GGTGGCGGTC
ATTACCGGTG CCGGCGGCGG CCTGGGCCGG GCCTATGCCC TGGAATTCGC CCGGCGCGGC
GCCAAGGTGG TGGTCAACGA CCTGGGCGGC TCCCGTGATG GTTCGGGTAA AGGATCAAAG
TCACCGGCTG AAGTGGTGGT CAAGGAGATC CAGGACCTGG GGGGTGAGGC GATTGCCAAT
TACGACAACG TGGCAACAGC CAAAGGCGGT GAAAATATTA TCAAGGCCGC GGTCAAGGCC
TTTGGTACCG TGGATATTGT CGTCAATAAC GCCGGTATCC TCAGGGACAA GAGCTTTCTC
AAGATGGAAC CGGAAAACTG GGACGCTGTT CTGGCGGTCC ATCTTACCGG TGCCTATAAC
GTCACCCGGC CGGCCTTTGC CATTATGAAG GAAAAGGGTT TCGGCCGTAT CATCATGACC
ACGTCCGCTG CCGGTCTTTA CGGCAACTTC GGGCAGACAA ACTACTCCTC GGCCAAGATG
GCCCTGGTCG GTTTCATGAA TACCCTTAAG CTGGAAGGGG GCAAATACAA TATCAAGGTC
AATACTGTCG CTCCCCTGGC CGCTTCCCGG CTGACCGAAG ACATCATGCC CCCGGAAATT
TTCGAGAAAA TGAAACCGGA GTATGTGGTA CCCCTGGTCA CCTACCTGGC CAGCGAGGAG
TGCGAGCCCA CCGGCAATAT CTTTAATGCC GGCATGGGAT ATTACAACCG GGCCGCCATA
ATGACCGGCA ACACCGTTCA GATCGGCGAT AATGATAAGC TGCCCACGCC GGAGGATATT
CATAAAAACT GGGATGCCAT CAACAGCCTG GAAGGCGCGA AAGAACTGTC CGACCTGAAT
ACCGCCATGA TGGATCTGCT GTCAGGCCCC CAGGCGTCCG GCGGCGCTGA AAAAGCCCAG
CCGGCCGGTG ATGCAGGAGA CGTCACCCCC CAGGTGGTTT TTGATATGAT GCCCGGCGTC
TTCAAGCCGG AAGCCGCGGC CGGTGTAAAT GTGGTCTTCC AGTACAGCAT TTCCGGTCCC
ACCGGAGGCG ACTGGAACGT CACGGTCAAA GACCAGAAAT GCCAGGTGAA AAAAGGCACG
GCGAAAAAGC CCACCTGTAC CATCAAGATG GCGGACGATA ACTTCGTCAA GATGGTGACC
GGCAAGCTCA ATCCCATGAA GGCATACTCT TCCGGGGATT TGAAGATCGA GGGCGATATC
ATGAAATCTC AGCTGATTGA AAAGCTGTTT ACCTTAAAAT AA
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| Protein sequence | MIGITSYGAF VPRYRLSRSS IFQTMGWFAP AIMMVAQGER SMCNWDEDPI TMAVGAGRDC
LTEYDKQQID GLYLASTSLP FMDRQNAGIV STALNLSEHI ATADFTSSQR AGTSALIHAV
ESVKSKEKNN VMVIGTDARE TKPAYFYEMW YGDGAASVTI GSKDVIAEYK GSFSLTRDFV
DHYKGKGRRF DYFWEERWVR DEGFSKIIPE AVNGLFEKIG MTGDKVDKFV FPCFFAKDRK
KIAKLCGIDP SRVTDPLHEV CGDTGAAHAL LMLAAALDDA KPGEIIVVAG FGQGCDALCF
KVTKNIATLA PRDGAHGTLE NKLSIDNYAK FLVFRQLIEP DMGIRAEAPL QTALTALYRN
RKMLLGLVGG KCRECGTPQF PKSKVCVNPH CEAMHSQDDY EFAGQPARVK TFTGDMLSVS
VDPPNIYGMV QFDNGGRMMA DFTDCSIDDV KVGLPVEMVF RRRVVDPERK FSSYFWKAKP
IAGAAVDEVD KLTMDGRVAV ITGAGGGLGR AYALEFARRG AKVVVNDLGG SRDGSGKGSK
SPAEVVVKEI QDLGGEAIAN YDNVATAKGG ENIIKAAVKA FGTVDIVVNN AGILRDKSFL
KMEPENWDAV LAVHLTGAYN VTRPAFAIMK EKGFGRIIMT TSAAGLYGNF GQTNYSSAKM
ALVGFMNTLK LEGGKYNIKV NTVAPLAASR LTEDIMPPEI FEKMKPEYVV PLVTYLASEE
CEPTGNIFNA GMGYYNRAAI MTGNTVQIGD NDKLPTPEDI HKNWDAINSL EGAKELSDLN
TAMMDLLSGP QASGGAEKAQ PAGDAGDVTP QVVFDMMPGV FKPEAAAGVN VVFQYSISGP
TGGDWNVTVK DQKCQVKKGT AKKPTCTIKM ADDNFVKMVT GKLNPMKAYS SGDLKIEGDI
MKSQLIEKLF TLK
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