| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1549 |
|---|
| Symbol | |
|---|
| ID | 5694386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1844331 |
|---|
| End bp | 1846463 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641264144 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001529430 |
|---|
| Protein GI | 158521560 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG2030] Acyl dehydratase
[COG3255] Putative sterol carrier protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTAA ATCCAAAGGC CGTCGGAATG GATCTGGATC CGGTGGTCAG GGAGTACACG
TGGAAGGACG TGGTTTTGTA CGCCCTGGGC GTGGGGGCCG GGTTTTCGGA CCTGGACTAC
TGTTATGAAA AAAACCTGAA GGTCATTCCC AGCTTTTCCA TTGCCGCGAT TTTCGATTTT
CTCATTCAGC TGGGCATCAA GTCGGAGTTG AACCTTGCCG GCCTGCTGCA TGCCGAGCAG
GAGCTGATTT TTCACAATCC CATTCCCGTC AACGGTAAGC TGACCACAAA GGGCCGCATC
ACCAACATGT ATGACAAGGG GCCCAAGGGC GCCATCATTG TGGGCGAAAC CGACACCTTT
GCCGAGGATG GAACCAAACT CTTTACCAGC ATCGTCACCC TGTTTGCCCG GTTTGACGGG
GGCTTTGGCG GGCCGGACGC ACCCAAGAAC CCGATTGTTA TGCCCGATCG CGCCCCTGAC
CTGGAGGTGG AGGATTGCCC GTCGCCCAAC CAGCCACTTC TGTACCGGCT CTCCGGCGAT
GTGAATCCAC TGCATGTGGA CACCGATTTT GCCAAGATGG CCGGTTTTCA GCAGCCCATC
ATGCATGGCC TGTGTACCCA CGGTTATGCC TGCCGGCTGC TCATCGGCAG CCTGATTCCG
GGCCAGCCGG AAAAGGCCCG CCGCATGGCA TGCCGGTTCA CCCGCACCCT GATCCCCGGT
GATCCCATCA AGCTCCAGGT GTGGAAAGAG GGCGACGGCA AGGCCTTCTG GCGGGTGGTC
AATCCCAGGA CCGGCGATAT TGTCATCGAC CTGGGCGTGT TCGAGTACGG CGATATTCCG
AAAGATGAAA TCCGGTTTGA CGACCGGGTG GCCATTATCA CCGGCGCCGG CGGCGGCCTG
GGGCGGACAT ATGCCCTGGA ACTGGCCAAA CGCGGCGCCA AAGTGGTTGT TAACGATCTG
GGCGGTGCCC GCGACGGCTC AGGCAAAGGA TCCTCCTCCG CAGCCGACAA GGTAGTTGAA
GAGATCAAGA AAGCCGGTGG CGAGGCGGTG GCCAATTATG ACAACGTGGC CACGGCCAAA
GGCGGCGAAA ACATCGTTAA ATCGGCCGTA AAAGCGTTCG GCAAGGTCGA TATTCTCATC
AATAACGCCG GTATTCTGCG GGACAAGAGC TTCCTTAAAA TGGAACCGGA AAACTGGGAC
GCCGTCATGG CCGTGCATCT TCAGGGCGCT TACAATGTGA CCCGCCCGGC TTTCAAGGTT
ATGAAGGAAA ACGGTTACGG CCGTATTATC ATGACCACCT CGGCAGCCGG TCTGTACGGC
AATTTCGGCC AGACCAATTA CTCTTCCGCC AAAATGGCCC TGGTCGGGTT TATGAATACC
CTCAAACTGG AAGGGGGAAA GTACGATATC AAGGTCAATA CCATTGCGCC CATCGCGGCT
TCCCGGCTGA CCGAAGATAT CATGCCCCCC GATATTTTCG CCAAAATGGC TCCCGAATAT
GTCAGCGCCA TGACGCTTTA CCTGTGCAGC GACCGCTGCC CGGTAAACGG TAACATTTAC
AATGCCGGCA TGGGCTTTTT CAACCGGGCC GCTGTTATAA CCGGCCCCGG CGTTGTGCTG
GCCGGTGGTG AGGATGGATT CCCAACAGCG GAAGCTATTC GCGACAATCT GCCGCGGGTT
TCTGCTTTAA AGAACGGCAA ACCCTATTAC CAGCTGAATG ATCAGGTCGG CGATGCCATG
ACCGCCCTGA TGAACCCGCC ATCCGCCGAC ACCGGCGACA CCGCGGCCCC CCAGGCGGAG
GCCCCGGCAG CAGCCGGATC GGTTAAGGAC TATTTCGCTT CCATGACCGA CCATTTTGTC
AAAGAGGCGG CCGCGGGTGT TGATGTTGTT TTTAACTTCC TGATTTCCGG TGGCGGCGGC
GGTGACTGGC ACTGCATCAT TAAAGACCAG ACCTGCACGG TGAAAACCGG CGCAGCCGGT
AAGGCCACCT GCACCATTAA AATGGCGGAC GGCGATTTTC TTGACATGAT GTCCGGCAGG
CTGGCGCCCA TGGCGGCCTA TTCATCGGGC AAGCTGGTTA TTGAAGGCGA TGTCATGAAA
TCCCAGCTGA TTGAAAAAGT GTTTAAACAA TAA
|
|---|
| Protein sequence | MALNPKAVGM DLDPVVREYT WKDVVLYALG VGAGFSDLDY CYEKNLKVIP SFSIAAIFDF
LIQLGIKSEL NLAGLLHAEQ ELIFHNPIPV NGKLTTKGRI TNMYDKGPKG AIIVGETDTF
AEDGTKLFTS IVTLFARFDG GFGGPDAPKN PIVMPDRAPD LEVEDCPSPN QPLLYRLSGD
VNPLHVDTDF AKMAGFQQPI MHGLCTHGYA CRLLIGSLIP GQPEKARRMA CRFTRTLIPG
DPIKLQVWKE GDGKAFWRVV NPRTGDIVID LGVFEYGDIP KDEIRFDDRV AIITGAGGGL
GRTYALELAK RGAKVVVNDL GGARDGSGKG SSSAADKVVE EIKKAGGEAV ANYDNVATAK
GGENIVKSAV KAFGKVDILI NNAGILRDKS FLKMEPENWD AVMAVHLQGA YNVTRPAFKV
MKENGYGRII MTTSAAGLYG NFGQTNYSSA KMALVGFMNT LKLEGGKYDI KVNTIAPIAA
SRLTEDIMPP DIFAKMAPEY VSAMTLYLCS DRCPVNGNIY NAGMGFFNRA AVITGPGVVL
AGGEDGFPTA EAIRDNLPRV SALKNGKPYY QLNDQVGDAM TALMNPPSAD TGDTAAPQAE
APAAAGSVKD YFASMTDHFV KEAAAGVDVV FNFLISGGGG GDWHCIIKDQ TCTVKTGAAG
KATCTIKMAD GDFLDMMSGR LAPMAAYSSG KLVIEGDVMK SQLIEKVFKQ
|
|---|
| |