| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1542 |
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| Symbol | |
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| ID | 5694379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 1835242 |
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| End bp | 1836846 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641264137 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001529423 |
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| Protein GI | 158521553 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00030715 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGAGG GCATAAGCAG AAAAAAAGTC ATGCAGGGCC TGGTGGTGGC GGTGCTCTGT
CTGATGGTCT ACTGGCCGTC GCTGAAAAAC GGTTATATCT GGGATGATGA TCAGTATGTG
TACAACAACC CGGCCGTGAC CCGGCCCGGC GGGCTGAAGG ATATCTGGCT GACCCACAAC
ATGCCCCAGT ACTATCCCAT GGTGTTTACC AGCTTCCGGC TGGAGCACAT GATATGGGGC
ACCGACCCGG CCGGATACCA CGCGGTCAAC CTGGCCCTGC ACACGGTAAA CGCCCTTCTG
GTGCTGGCGG TATTCTCCGC CCTGGCGCCG GGCATCGCCT TTGCCACGGC CCTGTTGTTT
GCCGTGCATC CCATTCAGGT GGAGACCGTG GCCTGGATAA CGGAGCGCAA AAACCTGCTG
GCCCTTTTTT TTCTGCTGAT GGCGACGCTC TGGTATCTCC GGCACTACCG GACCGGCAGC
ACCAGCCACT ACATTGGGAC GCTCCTGTTT TACCTGTGCG CCCTGCTGAG CAAATCGGCA
GCCGCCTGGT TTGCCGTGGT GCCCCTGGTT TTTGCATGGT GGAAAACCGG CGGCGTCACC
CGGCGGGATC TGTTAGCGGC TGCCCCCCTG CTGGTCATGG GCGCGGGCGC CGGGCTGCAC
ACGGCCTGGC TTGAGGCAAA CCGGGTGGGG GCCACGGGAG AGCTCTGGCA CCTGAATTCC
GTGGAACACG GGCTGCTGGC CGCGCGCATT CTTATTTTTT ACCTGTACAA AATCCTGGCG
CCTTTTGAAT TTATCTTCTT CTACCCAAGA TGGACCATAG ATGCCACTGC CTGGTGGCAG
TGGCTTTTTC CGGTACTGGT GGCAGGCGCG GTGTTCGGTG TGATTGCCTT CCGGAAACAG
ACCCGCCGAG ACGGACCGGC CCTGATGATC CTCTACGGGA CCGCTCTTTT TCCGGTGCTG
GGATTCTTTA ATGTCTATCC CATGCGCTTT TCCTTTGTGG CCGACCACTT TGCCTACCTG
GCCACGCCGG TGATCTTTGC CACTGTTGTT GCCGCGGTTT GTCTTACAGG GAGGTCCATC
AAGGTCCGCT TTTTTACCGA AACGGGGTCA GCAGCCGTTT TCCGCCGGGT GGGCCGGGCG
GCGGCCGTTG CCGTCATCGT GCTGCTGAGT CTCAAAAGCC TGGGGCTGGT GGAAAACTAC
AAAAACGAAG TGGCCTTGTG GAAAAGCGTG ACAGCCCAAA ACCCCGCCTC CTATGCCGCA
TGGAACAACC TGGGCAGCGC CTATGGTAAA ATCGGGCGGC ATCATGCCGC CCTGCCGTGC
TTTGAAAAGG CCATGGCACT TCGGCCGGAC CTGGCGAGAC ACGCCGTCAA CCTGGGCAAT
GCCCTTCTGA ATGTGGGGAA CTCAGGCCGG GCCCTTCCCG TTCTGCAACA GGCCGTGGCC
CTGGCGCCGG ACAATGGCGA GGCCCATCAC CTGGCCGCCA TTGCCTGTTT CAACCTGGGG
CTGCTTGACT GTGCCCAAAC CCACTGCCGG AAGGCCCTGG ACCTGGGAAC ACGGGTCAGG
CCGGAACTGA TCGAACGGCT CAGCCGGACC GGTGAGCCGG AATGA
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| Protein sequence | MVEGISRKKV MQGLVVAVLC LMVYWPSLKN GYIWDDDQYV YNNPAVTRPG GLKDIWLTHN
MPQYYPMVFT SFRLEHMIWG TDPAGYHAVN LALHTVNALL VLAVFSALAP GIAFATALLF
AVHPIQVETV AWITERKNLL ALFFLLMATL WYLRHYRTGS TSHYIGTLLF YLCALLSKSA
AAWFAVVPLV FAWWKTGGVT RRDLLAAAPL LVMGAGAGLH TAWLEANRVG ATGELWHLNS
VEHGLLAARI LIFYLYKILA PFEFIFFYPR WTIDATAWWQ WLFPVLVAGA VFGVIAFRKQ
TRRDGPALMI LYGTALFPVL GFFNVYPMRF SFVADHFAYL ATPVIFATVV AAVCLTGRSI
KVRFFTETGS AAVFRRVGRA AAVAVIVLLS LKSLGLVENY KNEVALWKSV TAQNPASYAA
WNNLGSAYGK IGRHHAALPC FEKAMALRPD LARHAVNLGN ALLNVGNSGR ALPVLQQAVA
LAPDNGEAHH LAAIACFNLG LLDCAQTHCR KALDLGTRVR PELIERLSRT GEPE
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