| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1274 |
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| Symbol | |
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| ID | 5694109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 1524476 |
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| End bp | 1526155 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641263868 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001529157 |
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| Protein GI | 158521287 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGACC GTCTGAAAAT TTCCAGGCCC ATCCAGGCGT CCATCCTGCT TGTACTGGTG
CTGGTTGCCT ATCAGCCGTC CCTTCACAAT GGGTTTATCT GGGATGACGA CCTGTATGTC
ACCCACAACA CCACGTTGCG AAGTCCTGAA GGATTAAAAC GGATCTGGAC CGTTCGGGGC
GTCACGGTCC AGTACTATCC CATGGTGTTT ACCAGCTTCT GGGCCGAGTA CCAGCTCTTC
GGACCTGAAC CGATGGTGTT TCACGCCACC AACATGATGC TTCACGGCAC CAATACCGTT
CTTGTCTGGC TGGTACTGGC GGCCCTGGGC CTGCCATGGG CCTGGCCGGC CGCGGCCATC
TTTGCCCTCC ATCCGGTGAA CGTGGAATCC GTGGCATGGA TCACGGAACG GAAAAACGTG
CTTTCCGGTC TTTTCGCGCT CTCCTCCCTG CTGATCCTGA TCCGTCTCTA TCTGCCCGGT
GCAAGAGAAA CGGAAGAAAA AGACAGGCTC CAAACCCGAA AGCGGTACAC TCTGTATGCG
ATCTCTCTGC TGCTTTTCGT CCTTGCCCTG CTGAGCAAGA GCGTGACCGC CATGCTGCCG
GTGGTTTTCC TGATTCTGGC ATGGTGGAAA CAAAAAAAGG TTCCCGTAAA CATCATCTAT
GCAATGCTCC CGTTTTTTGC CGCCGGGCTC GCGGCCGGCA TCAACACCTC ATGGATAGAA
AAAACCCTTG TGGGCGCATC CGGTCCGGAA TGGGACATCA CCGCTGTTGA ACGGGTGCTG
ATCGCAGGCC GTGCCCTCTG GTTTTACGCA TACAAGCTGG TCTGGCCGGC GGAACTGATT
TTTATTTATC CCCGGTGGGA GATCAATGCT TCAGCATGGT GGCAGTACCT GTTTCCCCTG
GCCGTGCTGC TTCTGCTGAC CTTTCTTTTT TCAGCAAGAA ATCGTATCAG CAAAGGGCCT
GTTGCCGGCG TGGCCCTGTT TACCGTTATC CTGTTTCCGG CACTGGGGTC TATCGACTAC
TACCCCATGC AATTCTCCTT TGTGGCCGAC CATTTTCAAT ATTTTGCCAC TCCTGTCCTG
ATCGCCATGA TCGTGGCCGG CGCACACCGT CTTGCAGACA GGAGGTATCA GTTCCGGGGA
AAAGCCCTCG CAACCGGCGG CTTTCTGGTG CTGATCGTTG TGCTCGGCCT GCGAACCTGG
AACGCGCAGG AAAAATACCG AGGGCTGCAG CCGTTATGGG AACATACGAT TACCCACAAC
CCAGGCTGCT GGATGGCCCA CAACAACCTG GGGACCACAC TCGCCGGCAA GGGAAAAACG
CAAAGCGCGG TCGCCTGTTT TCAGAGGGCC CTTGCGATCA AGCCGGACTA CTTTGATGCG
ACCAACAACC TGATCGCCTA TTACCGGGAA ACAGAAGATT ACGACCATGC CATTGGAATG
CTGCAAACCC TGCTTCAACT GCGGCCGGAC AGCAGCGCCA CTGTTTACTA CAACCTTGCC
TGCCTCTACT CTCTCAAGGG CGAGACGGAA ACCGCTGTGA CATACCTGCA AAAGGCCATT
GACAGGGGGT TCGGCCTGCT CCCTCTGCTG GAACGGGACA GGGACCTTGA GAATATCAGG
CATACCGATT ATTATAACCG GGCACTGGAG CAACTCCGGG AAAAACGGAC CGCCCGATGA
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| Protein sequence | MLDRLKISRP IQASILLVLV LVAYQPSLHN GFIWDDDLYV THNTTLRSPE GLKRIWTVRG
VTVQYYPMVF TSFWAEYQLF GPEPMVFHAT NMMLHGTNTV LVWLVLAALG LPWAWPAAAI
FALHPVNVES VAWITERKNV LSGLFALSSL LILIRLYLPG ARETEEKDRL QTRKRYTLYA
ISLLLFVLAL LSKSVTAMLP VVFLILAWWK QKKVPVNIIY AMLPFFAAGL AAGINTSWIE
KTLVGASGPE WDITAVERVL IAGRALWFYA YKLVWPAELI FIYPRWEINA SAWWQYLFPL
AVLLLLTFLF SARNRISKGP VAGVALFTVI LFPALGSIDY YPMQFSFVAD HFQYFATPVL
IAMIVAGAHR LADRRYQFRG KALATGGFLV LIVVLGLRTW NAQEKYRGLQ PLWEHTITHN
PGCWMAHNNL GTTLAGKGKT QSAVACFQRA LAIKPDYFDA TNNLIAYYRE TEDYDHAIGM
LQTLLQLRPD SSATVYYNLA CLYSLKGETE TAVTYLQKAI DRGFGLLPLL ERDRDLENIR
HTDYYNRALE QLREKRTAR
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