| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1273 |
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| Symbol | |
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| ID | 5694108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 1521805 |
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| End bp | 1524444 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641263867 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001529156 |
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| Protein GI | 158521286 |
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| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAACA GCACGTTCAA ACGCAGGCTT CTTCAGGCGA CGGCCCTGGT GGTCCTGGTG
CTGGCCGTCT ACCAGCCATC CCTGCACAAT GGCTTTATCT GGGATGATGA TGCCTACGTC
CATCAAAACC TTACGCTGAC AAGTCTTGAC GGGCTGAAAC GGATATGGCT GTCGCGGAGC
GCCACGCCCC AGTACTACCC CATGGTCTTT TCCAGCTTCT GGGTCGAATA CCAAATATTT
GGACCGGAGC CGATGGTGTT TCACCTTACC AACATGATGC TGCACGGCAT CAACGCCATC
CTGGTCTGGC TGATCCTGAT GCGGCTGGGC CTGCCCTGGG CATGGCTGGC GGCCGCTGTT
TTTGCTTTGC ACCCGGTCAA CGTGGAGTCC GTGGCATGGA TATCTGAACG CAAAAATGTG
CTTTCCGGCC TTTTTGCGCT TTCCTCTCTT CTGCTTCTGG TCCGTCTTTA TCTGACCGAT
ACCGATAAAA CCGTACAAAC GCCCCCTTCT CCGAAGAAGA ATGCGTATGC CCTCTATGGG
GCTTCCTTTT TTCTTTTCAT CCTTGCCCTG CTGAGCAAAA GCGTCACCTG CATGATGCCG
GTGGTGTTCC TGGTCCTGGT CTGGTGGAAA CGAGGCAAAA CCCCGCTTGG CACAATCGGC
GCGACAGTTC CTTTTTTTAT CGCCGGCATC GTGGCGGGCA TCAACACCAG CCTGGTGGAA
AAGCTCCATG TGGGGGCACA GGGTGCGGAT TGGGAGTTCA ACCTTCTTGA ACGGATGCTG
ATTGCCGGCA GGGCCCTGTG GTTTTACGCA TACAAGTTAA TCTGGCCGTC GGAGATAATG
TTCACCTACC CTCGATGGGA GATTGATTCC ACCGCCGGGT GGCAATACCT TTTTCCTGCT
GCCGTTATTC TGCTTTTCGC GATTCTCTTT GCCGCAAAAA ACCGCGTCGG CAGAGGGCCG
GTTGCCGGCG TGGCCATATT TGCAGTGACA CTGTTTCCGG CCCTTGGGTT TATCAGTTAT
TTCCCCATGC TTTTTTCCTT TGTGGCGGAC CACTTTCAGT ACCTGGCCAC CATTGCTCTG
ATTACGCTCG TCATTCAAGG ACTGCACCGC ATGACCAGCA CCGGGAGACG CCGGGCTCGA
ACTCTCGCGA TGGGATTCTG TACTCTGACC CTTTTGGCGT TGGGGGTTCG CACCTGGCAG
GAGCAGGACA AATACAAGAA CCTGCAAGCC CTGTGGGAGG ACACCATAAG AAAAAATCCC
GACTGCTATC TGGCATTAAA CAACCTGGGG TGCGTGCTGA TGTCCCAGCC TGATAAGCTG
GGCCAGGCCT ATGACATTTT TGCAGCCACT CTGAAGATGG GGCTAGATTA TCCCGAAACC
CGTTTCAACC TGGCCCGCAC GCTTTTTTAT AAGGGCGACC ATGAAGCGGC AATACGCTAT
TACACGGACC TGCTGGAGAA TAGCCCGGAA ATCTCACCCA AGCTGCTGGT GGATGTCCAT
TACGACATGG CAATGATACT GGTCCATCGT GACCAGATCG AAGCGGCTGA AACTCATCTC
CGGGCCGCTC TGGAGCTGAA ACCCTTTTTC CCGGAAGGAT ACAACGACCT GGGAGTGCTG
CTGCGCCGGG CGGAACAGTT TGACAAGGCT ATTGACGCCT TTTCAGAAGC CCTTGCCATG
AAGCCCGACT ATGCTGAAGC CCGGTACAAC CTGGCCCAGG TACTGTACGA CAGCGGCCAG
GCCGAAAAAG CCATGGTCCA TTATAATTTC CTGGTCCACG ACGAGACAAC CGGCCCCGAC
CTGCTGGCCA GCATTCATAA TGACCTGGGG GTTATTTATA CCCGCCGGCA CGAGCTGGAG
GTTGCGAAAG ATCACCTTTC CCGTGCCCTG TGCCTGGCTC CCGACTCCCC CATGTTTCAC
AACAACCTCG GCCTGCTGAT GATTAAGGCG GGCCGAAAGA GCACAGCACT GGAGTCCTTC
TCAAGGGCCG TTGTCCTTGA TCCGGATTAC GCCGAGGCCC GTTACCAGCT AGCCCTGCTG
TCGGCTGAGA CAGGTGATAC GGCAGCTGCC GTATCCCATT ACAATTATAT TCTGTCCAAC
GCGCCGGCGG CAGATAACGT TAATCTTCTG GCCGATGTAT ACAACGGCAT GGGGAACATT
TATGCTGAAC AAAACCAGAC AAAAAAGGCT ATTTACTATT TTAAACATGC CCTGGCTCTG
AAACCCGATT TTGCTGAAGT CCATAACAAC ATGGCCCTGA CCCTGCTTTC TCTGAACAGA
CGGCAGAAAG CCATTGATCA TTTTACCCGG GCACTTGCCA TTCAGCCCGG TTTTACGGAG
GCGGCCAACA GCCTGGTGCT GACCTACAGT GCTGCCGGAG CGTATGACAA AGCCCTGACC
GTGCTGAAGA ACCTGCTGGC CGCGGCGCCG GACAGCGCCG CCAGCATCAG CTACAACATT
GCCTGCATCC ACTCCATCCG CGGAGACCTG GAAAATGCGG CCACATGGCT GAACAGGGCC
ATTGACAGGG GGCTCCGTCT GCAACGCCTG CTGGAGACCG ACCCCGACCT GGAAAACATC
AGAAAAAGCC AATACTACCC CGGCCTGCTG GAACGCATGC AAAAATCAAC CGAAAAATAA
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| Protein sequence | MANSTFKRRL LQATALVVLV LAVYQPSLHN GFIWDDDAYV HQNLTLTSLD GLKRIWLSRS
ATPQYYPMVF SSFWVEYQIF GPEPMVFHLT NMMLHGINAI LVWLILMRLG LPWAWLAAAV
FALHPVNVES VAWISERKNV LSGLFALSSL LLLVRLYLTD TDKTVQTPPS PKKNAYALYG
ASFFLFILAL LSKSVTCMMP VVFLVLVWWK RGKTPLGTIG ATVPFFIAGI VAGINTSLVE
KLHVGAQGAD WEFNLLERML IAGRALWFYA YKLIWPSEIM FTYPRWEIDS TAGWQYLFPA
AVILLFAILF AAKNRVGRGP VAGVAIFAVT LFPALGFISY FPMLFSFVAD HFQYLATIAL
ITLVIQGLHR MTSTGRRRAR TLAMGFCTLT LLALGVRTWQ EQDKYKNLQA LWEDTIRKNP
DCYLALNNLG CVLMSQPDKL GQAYDIFAAT LKMGLDYPET RFNLARTLFY KGDHEAAIRY
YTDLLENSPE ISPKLLVDVH YDMAMILVHR DQIEAAETHL RAALELKPFF PEGYNDLGVL
LRRAEQFDKA IDAFSEALAM KPDYAEARYN LAQVLYDSGQ AEKAMVHYNF LVHDETTGPD
LLASIHNDLG VIYTRRHELE VAKDHLSRAL CLAPDSPMFH NNLGLLMIKA GRKSTALESF
SRAVVLDPDY AEARYQLALL SAETGDTAAA VSHYNYILSN APAADNVNLL ADVYNGMGNI
YAEQNQTKKA IYYFKHALAL KPDFAEVHNN MALTLLSLNR RQKAIDHFTR ALAIQPGFTE
AANSLVLTYS AAGAYDKALT VLKNLLAAAP DSAASISYNI ACIHSIRGDL ENAATWLNRA
IDRGLRLQRL LETDPDLENI RKSQYYPGLL ERMQKSTEK
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