| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1271 |
|---|
| Symbol | |
|---|
| ID | 5694106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1519583 |
|---|
| End bp | 1520686 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641263865 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001529154 |
|---|
| Protein GI | 158521284 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACAG TGCTCTCAGA CCGCCGGCTT TTGCCGGTGT GGGAAAAGGT GAAAAACAGC
GTACGGCTGG ATGCCGAAGA CGGCATGCGG CTTTACGAGA GCAACGACCT TGCCGGCATC
GGCGGCATCG CCGATTATGT GCGCAAAAAA CGCCACGGCA ACAAGGCCTT CTACGTTCAT
AACCGCCACA TCAACTACAC CAACATCTGC GTCAACCGCT GCCTGTTCTG CGCCTATTCA
AAGGACAAGG GCGATACCGG CACCTATGTG CTTTCTCCGG ACCAGGTGGG CAGTGACGCA
AAAAAACCGG AAAATGCCGG GGTCCGGGAG TTTCACATTG TGGGCGGAAT CAACCCGGAC
CTGCCCTTTG ATTATTACCT GGACCTGATC CGGGCTCTCA AAAAGGCCCG GCCCGATGCC
ACGGTCAAGG CCTTTACCGC CGTTGAGATC GACTTTATCG CCCGCATGGC CGGCCTCTCC
CTGGAGGACA CCATCGCCGG GCTGAAGGCG GCCGGCCTTG CCATGCTGCC CGGTGGCGGG
GCCGAGGTGC TGTGCGACCG GGTGAGGCAG AAGCTTTTTG CCAAAAAAAT TTCAGCGGCC
CGTTGGCTGG AGGTGATGGA GACGGTGCAC CGGGCCGGGC TGGTCACCAA CGCAACGCTG
CTGTACGGCC ATATTGAGAC CCTCGAAGAG CGGGTGGACC ATCTGCTGAC CCTGCGCCGG
CTTCAGGACA CCACCGGCGG GTTTTCCGCC TTTATTCCCC TGGCCTTTCA CTCGGCCAAC
ACAAAGCTTT CAGCACTTCC GCCTACCACC GCCTACGATG ATTTAAAGAC CATTGCCGTT
GCCCGGCTGC TTCTGGACAA CATCGATCAT ATCAAGGCCT ACTGGGTGAT GATCGGAGAA
AAGCTGGCCC AGGTGGCGCT CTCCTTCGGC GCCGATGACC TGGACGGCAC CATCATCGAG
GAGCGGATCA CCCACACGGC AGGGGCCACA TCGGCAAAGG GACTGACGGT TTCCCAGCTG
CGGCACATGG TTGAATCGGC CGGGTTCGAG GCTGTTGAGC GGGACTCGTT TTACCGGCCG
GTGCCGGAAG AAGGGGGCGC CTGA
|
|---|
| Protein sequence | METVLSDRRL LPVWEKVKNS VRLDAEDGMR LYESNDLAGI GGIADYVRKK RHGNKAFYVH
NRHINYTNIC VNRCLFCAYS KDKGDTGTYV LSPDQVGSDA KKPENAGVRE FHIVGGINPD
LPFDYYLDLI RALKKARPDA TVKAFTAVEI DFIARMAGLS LEDTIAGLKA AGLAMLPGGG
AEVLCDRVRQ KLFAKKISAA RWLEVMETVH RAGLVTNATL LYGHIETLEE RVDHLLTLRR
LQDTTGGFSA FIPLAFHSAN TKLSALPPTT AYDDLKTIAV ARLLLDNIDH IKAYWVMIGE
KLAQVALSFG ADDLDGTIIE ERITHTAGAT SAKGLTVSQL RHMVESAGFE AVERDSFYRP
VPEEGGA
|
|---|
| |