| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1258 |
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| Symbol | |
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| ID | 5694093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1500676 |
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| End bp | 1503039 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641263852 |
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| Product | type III restriction protein res subunit |
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| Protein accession | YP_001529141 |
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| Protein GI | 158521271 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.377183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGAA ACGAAAAACA GACATGCACA GACTTAATTG AACCAGCCCT TACAAAAGCC
GGCTGGCAAT GGGATAGTCA GGTCACCATC GGCCTCGGGC GGGTCAATAT TACTGGCGAT
ACCATGTATG ATGAAACGCA GACAATTATT GCCGACTATG TTCTGCGCTA TTATGGTGCG
CCACTGGTCG TCCTTGAAGC CAAAGCAGAG TCGATCTCTG CTGCCGATGG CATGCAACAG
GGATCGCGTT ATGCGGGACG GCTGGACATC CGTTTTTCCA TCGCCACCAA TGGCACCGAC
TGGGTTCTTA CCGACAATGA TTCTGGCAAA TACGAAACGC TTTCTGCGCC GCCATCGCCG
GAAGCCATCC TCACACATCA CGGCATTTCC ATTGACTGGG ATCAATGGGG CGAGGTCTTT
TCAGCTGGGT ACCATATTGA TCAAGTCTCT CGCAAAGTAG TCAGGCCATA TCAAGATGTG
GCCATCCATA AAACCCTCTG GCATTTTGCC GGTGGGAATA ACCGAGCCCT TCTGCTGATG
GCAACCGGGA CAGGAAAAAC ATTTGTCGTT TTTCAGTTGG TCTGGAAATT GTTAAACACC
AGTATCCTGA AGCGCCAGCA CATCCTTTTC CTGACCGACC GTAATTCGCT TAAAGATCAG
GCCTACCGGG CTTTTGCCGC TTTTTCCACC GATGAACGCG TCACCATCAA CAAGGATACC
GTCGCCAATG GCCAGCACCA GGTTGGTAAA GTGTTCTTCG CCAATTATCA AAACCTGGAT
GAAGAACTGG ACGGCAAAAA AATCTTTGAG CACTACGACC AGGACTTTTT TGATCTGGTC
ATTATCGACG AATGCCATCG GTCCGGATTC GGCGACTGGT TTGGCGTGCT GGAACATTTT
AACTCCGCCC TGCAGATGGG TCTTACCGCC ACGCCCCGCG AACTTGAAGA AGGCCGCCGC
GTTTTGACTG AAGAAGAAAA ACGTCGCGAT ACCTATGAAT ACTTCGGTGC CCCGATCTAC
ACATACAGCC TTAAGCAGGC TATTGAGGAC GGCTATCTTG TTCCCTACCT GCTTGAAGAA
CGCATTACCA ACGTCGATGA AGAAGGCTAC ACCGGGCTGG ACGGCAAACA CTATACGACA
GCCAACTTTG AACGCGATAT CCGCATGCCG GACCGTACCA CAGCCATTGC TGAAGACCTT
TGGGAAATCT TAGGGCAATA CGACTTGCGA GATGAAAAAA GCATTGTCTT CTGCGTGGAC
GATACCCATG CGGCGTTCAT GGCTGCTGAA CTGCGGCGCC TGTCAGGAGA CGATGATTAT
GCCGGCCGCA TAGTTCGTTC AGAACGCAAC AGTCATCAGC TGGAACGCAA CTTTGCCACT
GTCGGTTCCA CCAAACCCCG CGTCGCCGTA ACCGTGGATC TTTTAACCAC TGGTTTCGAC
GCTCCAGATG TAAAAAATAT CGTTTTTGTA AGACCACTTC GAAGCGCCAT CCTTTACAAG
CAGATGAAAG GGCGCGGCAC CCGCCTCTGC GAGGATATCA ATAAACGGTA TTTTACCATT
TTCGATTATT CCGGTGCCAG TCAACTTGAA GATGCGGAAT TTGACGGCCA TCCGGCCAAC
CGGCAGAAAG GGGCTCAACC CAAAACCAAG CCGCGGAAGA AAACCGACGA GCCCGCCGCA
AAACCGGCGG GTGAAGGCAT CTCGGTGGTT ATTTCCGACA CCAACCGCTA TGTCTGCCTG
GCGGATGGCC GCAAGATCCC CTTTGAGGAG TATACCGAGC AGTCGAGGAA CTTTATCCTC
GATGTTTCAG CCAAGTCCCT TGACGAGCTG CTCACCATCT GGATCGACAA GAACAGCCGC
AAGGAGTTGC GTGAGGAGCT GCGGGACCAT GATATTTATC CGTCCGCCTT CCGCCATTAC
CTTGAATTGC CGAAGACCGA CGATGTGGAC ATCCTGGCCA AAATCGGCTT CAACCTGGTG
CGAGTGCCAA CACGCCCACA GCGTGTAGAG CGTTTCTGGA AGGATGAGGC CCAATGGCTG
GAATATGAAT TGGGGGCAAA TAGAGTTAAT AAAGCACAAG TGTTCTCATT TCCTAAGTCT
CAACCCATGG ATAAGGTTGC GGACCCCGAG CCCGGCTACC GTTCGTCAGA TCCCTTCAAA
GTATTATTCT GGCAATGCGC CCTTGACCAT TACCAGTTGT TCGGAATCGA TGATCTGGAG
CAGGCCCGGA CCTATGGCGC CCCCCAGTTT GTCGCACAGT TCGGCAGTTT TCAAACCCTG
ACCAGCCGTT ACGGCGGGCC GCAACTATTA AAAACCGACC TGGAGGCGGT AAAGCACCAC
CTCTATGTAC CCATGACTGT ATAA
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| Protein sequence | MSRNEKQTCT DLIEPALTKA GWQWDSQVTI GLGRVNITGD TMYDETQTII ADYVLRYYGA
PLVVLEAKAE SISAADGMQQ GSRYAGRLDI RFSIATNGTD WVLTDNDSGK YETLSAPPSP
EAILTHHGIS IDWDQWGEVF SAGYHIDQVS RKVVRPYQDV AIHKTLWHFA GGNNRALLLM
ATGTGKTFVV FQLVWKLLNT SILKRQHILF LTDRNSLKDQ AYRAFAAFST DERVTINKDT
VANGQHQVGK VFFANYQNLD EELDGKKIFE HYDQDFFDLV IIDECHRSGF GDWFGVLEHF
NSALQMGLTA TPRELEEGRR VLTEEEKRRD TYEYFGAPIY TYSLKQAIED GYLVPYLLEE
RITNVDEEGY TGLDGKHYTT ANFERDIRMP DRTTAIAEDL WEILGQYDLR DEKSIVFCVD
DTHAAFMAAE LRRLSGDDDY AGRIVRSERN SHQLERNFAT VGSTKPRVAV TVDLLTTGFD
APDVKNIVFV RPLRSAILYK QMKGRGTRLC EDINKRYFTI FDYSGASQLE DAEFDGHPAN
RQKGAQPKTK PRKKTDEPAA KPAGEGISVV ISDTNRYVCL ADGRKIPFEE YTEQSRNFIL
DVSAKSLDEL LTIWIDKNSR KELREELRDH DIYPSAFRHY LELPKTDDVD ILAKIGFNLV
RVPTRPQRVE RFWKDEAQWL EYELGANRVN KAQVFSFPKS QPMDKVADPE PGYRSSDPFK
VLFWQCALDH YQLFGIDDLE QARTYGAPQF VAQFGSFQTL TSRYGGPQLL KTDLEAVKHH
LYVPMTV
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