| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1227 |
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| Symbol | |
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| ID | 5694061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1466087 |
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| End bp | 1467391 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641263820 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001529110 |
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| Protein GI | 158521240 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAAA CCATCGCCCT GGGGATTGAG AGACGACGTT TTCCCCGTCT TCGGGTAAGA
GACGGTGCGG TCAGCTTTCT TGAGGGTGAA AATATGCGCA CCGGCCGGCT TCTGGACATC
GGCCTGGGCG GCGTGGGATT CAAGTATGCC GGCACCAACA ACGGCACTTC TACCGGCCGG
ACCGGAGAGA CCCATGTGTT TGTTAACTCA GACCTGTTTC TGCTGACCCA GGTGGCCGGG
CAGGTGGTGT CGGATCATGC CATCGGGGCC AGGGCCTTTA TGGCCTCCCG TGCCATGGGC
CGCTGCGGTA TCTGTTTTCA GGCGTTGCCC CACAGCAAAA CCGAATACCT GGATCAGTAC
CTGGGTATGC AGAGCCGGCA GCGGCGCACT GCCAACATGT TGGAAAAAGA GCTGGACATT
CGGGAGGAAC GGTACCGCTC CATTGTGGAG GGCATCGGCG AGGGCTACGT GGAGACCGAC
ACCCTGGGCC ACATGGTTTT TTTTAACCGG GCCATGACCG TTCTGACCGG TTTTTCCCGG
CAGGAGCTGA CCGGCCGCAA TATCCGGCGG CTGATGACCC GGGAGACCCG AAGCCGGGTG
TTTCAGCTCT ATAGAAAAGC TGAACAGCGA AGCACCCCGA TTCCCATGGT GGACTGGGAA
ATCATCGGCA AGGATGGCGA AACCAGAACG GTTGAGGCCG CCACTACATT TATACGGGCC
GCTGACAAGA AAATTACCGG CTTTCGCGTG GTGCTGCGCG ACATCGGGGC TCGGCGGGAA
AAAGAAAAGG TCCTGCTTTA CCAGGCCTCC CATGATTCGC TGACCGGCCT TTACAACCGG
GACGCCTTTG GGGTGTGCCT GGCCGACATG ATCGGCCGGT CCCGGCGGAC GGGTCACCGG
ATGGGCCTTC TTTTTCTGGA TCTCGACCGT TTCAAGGAGG CCAATGACCG GTTCGGCCAC
GATACCGGCG ATGACCTGAT CAGGGAGGTT GCCCGACGGC TCACCGGCTC TTTGCGCGAG
ACCGATGTGG TGAGCCGTTA CGGTGGCGAC GAGTTTGTCG TGATCCTCAA CGGGGGGGAG
TATCTTGACC CTGAAACCGT GGCGGAAAAG CTTTTGGACC GAATCTCCGC ACCCTATCAC
ATCAACGGCC ATACCATTGA TTTTCTGTCG GCCAGCATCG GCATCAGCCT TTTCCCGGAA
GACGGCACCG ACCCCGACAC GCTTGTCCGC CAGGCCGACC AGGCCATGTA CCGCGCCAAA
CTGATCCGCA ACCATTATGC CCGGTGCGAA GCACTGGTGG TGTAA
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| Protein sequence | MPETIALGIE RRRFPRLRVR DGAVSFLEGE NMRTGRLLDI GLGGVGFKYA GTNNGTSTGR
TGETHVFVNS DLFLLTQVAG QVVSDHAIGA RAFMASRAMG RCGICFQALP HSKTEYLDQY
LGMQSRQRRT ANMLEKELDI REERYRSIVE GIGEGYVETD TLGHMVFFNR AMTVLTGFSR
QELTGRNIRR LMTRETRSRV FQLYRKAEQR STPIPMVDWE IIGKDGETRT VEAATTFIRA
ADKKITGFRV VLRDIGARRE KEKVLLYQAS HDSLTGLYNR DAFGVCLADM IGRSRRTGHR
MGLLFLDLDR FKEANDRFGH DTGDDLIREV ARRLTGSLRE TDVVSRYGGD EFVVILNGGE
YLDPETVAEK LLDRISAPYH INGHTIDFLS ASIGISLFPE DGTDPDTLVR QADQAMYRAK
LIRNHYARCE ALVV
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