Gene Dole_1127 details

Gene Information

• Locus tag: Dole_1127
• ID: 5693961
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 1338389
• End bp: 1340392
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 641263721
• Product: N-acetylmuramoyl-L-alanine amidase
• Protein accession: YP_001529011
• Protein GI: 158521141
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0860] N-acetylmuramoyl-L-alanine amidase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCTGCC GAAAACGCGC ATCGTTTGTG ATGATTCTCG GCTGCGTGGC AGCGGTGTTC 
TTCTCCTGCG CCTCTTCTTC GGCAAACCTC AAGACCCGGT TTTTTGAGGC GGAAAACTGT 
TATGCCGACC TGTCCCAAAA TCCGTCCCGG CAGCAGTACC GGTCCTACTG GCAGCGGTGT 
ATTAACGCCT TTCTGGATGT CTATGAGCAG GATCCCGCCG GTCCCTGGGC CGCGGCCGGC 
CTTTACCGGG CCGGGTTGCT GTACACCGAG ATGTATAAGC ACTCCTACCG GTCCGCCGAT 
CTTCAGGAGG CCGCCGACCT GTTCAACCGC ATTGTTCACC GGTTCCCGGA CAGTGCTTAC 
AGCGCCAGGG CAAAGGAGCA GCTGGCCGGG CTTTCCGGCA AGACGACGGT GGTCAAAACC 
CCGGCCACGG CCCCGCCTTC CCCGTCGCCG TCCGAAGATA AGATAAAGGC CCGTTATTTT 
GAGGCCGAGG GCTGTTACAG CGACCTGGCC AACGCCCCCC GCCGCCAGAA ATACCGCAGT 
TACTGGCAGA CCTGTATCGA CGGGTTTTAC GATGTGTACA AAAGCGACCC CACCGGTCCC 
TGGGCCGCGG CCGGCCTTTA CATGGCCGGA AAGCTTCAGA CCGAGTTGTA CAAACACTCC 
TACCGCCAGG CCGACCAGGA CCGGGGGGTT GAACTGTTGC AGCAGGTGGT GCGCGAGTTC 
CCCCAGAGTG CTTATAATGA AAAGGCAGTG GCCGTGCTGG GCGGTATTTC CGGTGCCTCG 
CCCCTGGTGG TGTCCGATGC CGTCTCCCCG GATGACCCTG CCGACGATCC CTACTGCATG 
CCCCCGCCGG AAACAACCCC TGCTCCCCCG GGGCCCGCCA TTGTGGAGGG GCTGCGGTTC 
TGGTCCAACC CGGCCTATAC CCGCGTGGTC ATCGACACCA ACAAACAGGT GGAATACAAC 
CACAACCTGC TCAAGCACGA CCCCCGCCAG GGCAAGCCCC AGCGGCTGTA CGTGGACCTG 
GCCCAGTCCC GGCTGGGCAA GGACATGTCG CGCAGCATAC CGGTGGACGA CAATCTGCTG 
AAAGATATTC GGGCCGGCCA GTTTACCACC GATACCGTGC GGGTGGTGGT GGATATCAAG 
TCCTTTGAGG ACTACGATGT TTTCTATCTG CAAAACCCTT TTCGTATCGT CATCGACGTG 
AGAGGGGAAA ACGGGGACAA GGCCCAGGTG GCCCGGGCAC CGGATGAAGT GCTGCCGCCC 
TCCACCGGTC CCAAGTCCCT GGCCGAACAA CTCTCCCTGG GGGTGCGGCG CATCGTGATC 
GACGCCGGTC ACGGCGGCAA GGACGGGGGC GCGCCCGGAT ACCGGAAGGG CGTCCATGAA 
AAGGCCGTCA CCCTTTCCCT GGCCCGGAAA CTGGCCGACC AGATTCGACG GGAGATCGGG 
TGCGAGGTGA TCCTGACCCG CACCTCGGAC ACATTCTTAA CACTGGAAGA GCGCACCGCT 
ATAGCCAACA CCCGCAACGC CGACCTGTTC ATCTCCATTC ACACCAATGC CTGCCGCTCC 
AACAACGCCT ACGGCATCGA AACCTATATT CTCAACATCG CCACCGATGA AGAGGCCATG 
GAGGTGGCGG CCCGGGAAAA TGCCACCTCC ACAAAGAACA TCAGCGATCT TCAGGTGATC 
CTTCAGGACC TGATGCAGAA CACCAAGATC AACGAATCCA GCCGCCTGGC CGGTTTTGTG 
CAGGGCTCCC TGGTCGGCAA CCTGAAAAAG AGCTACAGCC GGATAAAAGA CAAGGGCGTC 
AAGCAGGCCC CGTTCTATGT TCTGCTGGGT GCCCAGATGC CGGCCGTGCT GATCGAGACC 
GGGTTTATCA GTGACAAGAC CGAGTGCGGT CGCCTGATCG ACGGCAGCTA TCAGGACAAA 
GTGTGTGAAG GCATCGTCAG GGGCATTAAA GAATACATGC GCCACACCAA GATGGCGGCC 
TTCTCCCCTG GCGGGGATGG ATAG 

 

Protein sequence

MICRKRASFV MILGCVAAVF FSCASSSANL KTRFFEAENC YADLSQNPSR QQYRSYWQRC 
INAFLDVYEQ DPAGPWAAAG LYRAGLLYTE MYKHSYRSAD LQEAADLFNR IVHRFPDSAY 
SARAKEQLAG LSGKTTVVKT PATAPPSPSP SEDKIKARYF EAEGCYSDLA NAPRRQKYRS 
YWQTCIDGFY DVYKSDPTGP WAAAGLYMAG KLQTELYKHS YRQADQDRGV ELLQQVVREF 
PQSAYNEKAV AVLGGISGAS PLVVSDAVSP DDPADDPYCM PPPETTPAPP GPAIVEGLRF 
WSNPAYTRVV IDTNKQVEYN HNLLKHDPRQ GKPQRLYVDL AQSRLGKDMS RSIPVDDNLL 
KDIRAGQFTT DTVRVVVDIK SFEDYDVFYL QNPFRIVIDV RGENGDKAQV ARAPDEVLPP 
STGPKSLAEQ LSLGVRRIVI DAGHGGKDGG APGYRKGVHE KAVTLSLARK LADQIRREIG 
CEVILTRTSD TFLTLEERTA IANTRNADLF ISIHTNACRS NNAYGIETYI LNIATDEEAM 
EVAARENATS TKNISDLQVI LQDLMQNTKI NESSRLAGFV QGSLVGNLKK SYSRIKDKGV 
KQAPFYVLLG AQMPAVLIET GFISDKTECG RLIDGSYQDK VCEGIVRGIK EYMRHTKMAA 
FSPGGDG