Gene Dole_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1081 
Symbol 
ID5693915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1278372 
End bp1279562 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content55% 
IMG OID641263675 
Productdiguanylate cyclase 
Protein accessionYP_001528965 
Protein GI158521095 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGATC CTGATAAAAA CAATTCTTTA ACGCCGGCAA CCGAAGGCTC GATTGAGCAC 
AGCTGGCTGT CCAATCCCCT GGACTGGCCC CACATTGACC GTATGATACT GCTCGTCCTG
CTGGTAATGT TCTCCCCGGT CTTCATTGGC GGGGTGCTTC TGGTCGCCTA TCTTGTTTCG
CCCGAATGGT TTGACAGGTC GATCGTCATT GCATTGCTGT CACTGTATGG GTTTGTCTTC
GTACTGCTAC TCTACTTCAT CCTGGCGGCC TTTCACCGGC GCCGGCAAAA ATCCAGCTGG
CCACTGATGG AAAACATTAT GTTCGGCTCT TATGTCGTCA TCGTTTGTGC CGGGTCCTGG
TTCACCGGAA CGTATTACAC CTTCGGCGCG CTGTTTCTTT TTTTTGGTGC CAGCATTTCT
TCTTCGCTGG CGGATATCCG TAAAGTTCGG CTGGCATATT TGGCTTCCTT CGGGGCGCTG
GTTGCCTTCA TCGTTATGGA CAGCAGCGGG ATGTTTCGCC ACGCGCCGCT CTTCACTCGC
ATTCCGCTTC ATCCGGACGG ATCGCCGCTA CCGGTCTGGT TCGGCGTGCA GGTGTTTATA
ACGGTTTCCC TGACAATTAT GCTTTATATC ACCATCGTGA CTTTCAAGCG CTGGGGCGTC
CGGGAAGACG TCTACCGAAA AATGTCCACA GTTGACGGGC TGACCCGACT GACCAACCGC
AGAACCTTTA TTGAACGCAG CGAAAAAGAG TTGTCCAGCG GCCAGCGACG CCCATCGTCC
CATATTTCCT GTATCATGAT AGACATCGAT CACTTCAAGG CCATAAACGA TACTTACGGC
CATGCTGCCG GTGACAAGGT GCTGGTAAAA ATCGCGACGA TCCTGACGGA AAAGGCCCGG
CCAACCGACG AGGTCGGCCG CTACGGCGGG GAGGAGTTCG CGATGCTGCT GCCAGCCACA
ACACTGGCCG GCGCGGTCAA GGTGGCCGAG CGTCAGCGGG CCAGTATCGC GAATGCGGAA
ATTATTGTCG ATGGCAATAT CATCCAGGTA ACCGCCAGTT TTGGTGTCGC CAGTTGCCCT
TCAGACGATA TTGATAATAT CAACGAACTG CTTAAGACGG CCGATGTAGC CCTTTACGAG
GCCAAGCGGG CCGGACGTAA CCGGGTTGTG GCCGCGGCCG GTGAAAAATA G
 
Protein sequence
MADPDKNNSL TPATEGSIEH SWLSNPLDWP HIDRMILLVL LVMFSPVFIG GVLLVAYLVS 
PEWFDRSIVI ALLSLYGFVF VLLLYFILAA FHRRRQKSSW PLMENIMFGS YVVIVCAGSW
FTGTYYTFGA LFLFFGASIS SSLADIRKVR LAYLASFGAL VAFIVMDSSG MFRHAPLFTR
IPLHPDGSPL PVWFGVQVFI TVSLTIMLYI TIVTFKRWGV REDVYRKMST VDGLTRLTNR
RTFIERSEKE LSSGQRRPSS HISCIMIDID HFKAINDTYG HAAGDKVLVK IATILTEKAR
PTDEVGRYGG EEFAMLLPAT TLAGAVKVAE RQRASIANAE IIVDGNIIQV TASFGVASCP
SDDIDNINEL LKTADVALYE AKRAGRNRVV AAAGEK