| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1055 |
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| Symbol | |
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| ID | 5693890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1245434 |
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| End bp | 1249045 |
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| Gene Length | 3612 bp |
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| Protein Length | 1203 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641263652 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001528942 |
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| Protein GI | 158521072 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCGCC GCGAACCGTT TGACATACTT TGTGCCGATC TCTCCGGCGG CATCACCACC
CTGGTGGAGG CCAGTGCCGG CACGGGCAAG ACCTATGCCA TTGTGGGGCT GTTCCTGCGC
CTGATTGCCG AGACCGACGC AGGGGTGGAC AACATACTGG CGGTCACCTA CACCGAGGCC
GCCACCCAGG AGCTGAAAGG AAAAATACGG ACCGCCCTGC GAAAGGCGGC CACGGCTTTC
AAAACAGGGA CGATGAGCGG GGACCCGTTG ATCGACGGGC TGCTGAAAAA GCGGGAAACA
ACGCGGGCGG TGGCGGCCCG CCGCCTGAAA CGGGCACTGG AGGCCTTTGA CCAGGCCGCC
ATCTTTACCA TTCACGGGTT CTGCAGCCGC ATGCTGGGTG AGTTCGCTTT TGAAAGCGGG
GTTCTGTTCG GCGCGGAAAT GGTGACCAAC CAGGATGAAC TGGTGCAACA GGTGGCCCGG
GATTTCTGGC GCCAGCGTTT TTATGGCGCC TCCCCCCTGT TCCTCGACTA TGCTGTGGGG
GAAAAGGGGC TCTGCGTCGA TACCTTCACC CGCCTGCTGA ACAACTGGAT GGTGTTTCCC
GACCTTCGCG TGGTGCCCGG CGCTGACGAG ACCGTTGACA CAGCGGCCCT GGAGGCGGCG
TTTGCCGCCT CCCTGGAACA GGTGGCCGCG CAGTGGACGG CAGACAAAGC GGCGGTGCAG
GAGATTCTGC TCAACAGCGG CGGTCTGCGC CGGAACCTGT ATCGCGCTGA CTGGCTCTCC
GGCTGGTTTC TCCGGATGGA CGCGTACGCG GGCCCGCGGG AAGGGCTTCC CTCCGAGTTT
GAGCAGTTTA AAAAATTTAC CACAACCGGT ATTGCGGAGG GGACCAAATC AGGCGGCACC
GTGGCCCATC ACCCGTTTTT TGATACCTGC CAGCAGCACA TGGAGATCCG GCAAGCCCTG
ACCGGGGCTT TTGACCGGCG CATCGCCGTG GAAAAGAGCC GTTTTCTGGG CGAAGCGCGA
AAGGCCCTGG ACGCGCAAAA GCAGCGGCTG AACATTCGCT ATTTTGACGA TCTGCTGCTC
AATCTGGACC GGGTACTGGT CTCGGATGCC CGCACCGGGC TCATTGAAAA GGCGCGACAC
CGGTACCGGG CCGTGCTGAT CGATGAGTTC CAGGACACCG ACCCCCTGCA GTACCGTATT
TTTTCGTCCC TGTTTCAGGG GGCGTCCGCC CTTTTTTTTA TCGGTGATCC AAAACAGGCC
ATCTACGGGT TTCGGGGCGC TGATGTGTTT GCCTACCTGG AGGCGGTACC GGGAGTGGAT
GTCGCCTGCA CGCTGGCGGA GAACTGGCGT TCCCGTGCCG GCCTGGTGAC GGGCGTCAAC
ACCCTGTTCC AGGCGGTAGC CGCGCCGTTT GTGTTTGACG AGATCAATTT TGCTCCGGCG
GCGCCGGCAT CCGGCGCTCA GATTCCCCGC CTGACCATTG ATGGGAACGA GCCCGCCGCC
CTGGAGCTGC GCCTGATGGA GAGTGATGAC TTTTCCACAA AAACCCAAAA AGCGGCCTGG
ATACAACTGG TGGCTAGGGA TACGGCGGCC CAGGCGGCCC GGCTGGTGGC CCTGGGCCGG
GAACAGAAGG CGTGGCTGGG GGACCGGCCC CTGGCGGCCG AGGACATGGC CATCCTGGTG
CGCAGGAACA CCGAGGCCAT CCTGGTCCAG GAGGCCCTTT CAAGGCTTAA TGTACACAGC
ACCATCCTGA AGGCCGGCGA CCTGTTTGGA TCCCACGAGG CCTTCGAGAT GCAGGTGCTG
CTCTCCGCCG TGGCGTTTGC CCATGATCTC TCTCTGGTCA AGGGGGCCTG CGCCACCCAA
ATGATGGGCC ACGATGCCCG GCGCATCGCC GGCCTGTCGC TGGAAGCAGA CACGACGGAC
CCGGTGGTGG AGCGCTTTCT GTCATACCGG GATCTGTGGC GGCGCCACGG TTTCATGAAG
ATGTTTTCCC GGCTGTTGCG CAGGGAGGAA GTGCTGCCCC GGCTCATGGC GTTTCCGGAC
GGAGAGCGGC GCTGTACAAA CCTTTTTCAC CTGGCCGAAC TGCTTCACAG AACAGCCCTG
GAGGCCCACT ACGGCCCGGA ACGGCTGGTC CGCTGGCTCA TGCGGCAGCG GACCGGCCTT
CAGGGCCGGA ACGAAGAGCA CCAGCTGCGG CTGGAGAGTG ACGACAGCGC GGTCAAGATC
ATCACCATTC ACAAGAGCAA AGGGCTTGAA TATCCGGTCA CCTTCTGTCC GTACTTATGG
ACCGGAACGC CCAGGACCGC CGGAGGAGAT GGCGTGGCCT GCCACGAACC CCGGGAAGAT
GGGAGCTTGT CCATGGTGCT TGACCTGCGG TCCGGTGACG CCGAGGGTGT GGCGGACCGG
CGGGAGAGAT GGTACCGGGA GACCCTTTCG GAAAACATGC GGCTGCTTTA CGTGGCCCTG
ACCCGGGCGA AAAACCAGTG CTATGTTTCG GTGGTGCCGG AGAAGGCCGA CGGCTCTCCT
CTGGCCGCGC TGCTGGGAAC CGGGGAGGCG GGCATCTCGG CCGACGCCCT GGAAAGAGTG
GCCGGACAAT CCGGCGGATC CATTCACGTC ACACGGGTAG GGCCGGCGGA TCTGCATGCC
GCCCCCCTGT CGGCGGAGGA CGGCGGGGCC GAAGCGAAGC TTTCCTGCCG GCGATTTCCC
GGAACCATTG CCGCGGATTG GCGGGTGGCC AGTTTTTCCG CCATGCGGCG ATCTTTTTCC
GGAACGGAAG CAGACCACGT GGCCGCCGAT GATGGGGGAG TGACGCCCGA CCCTGAGTTG
CTCTCCGCCC CTTATACCGG CATCGCACAG TTCCCGGCCG GCGCCAGAGC CGGTCTGTTC
ATGCACGAGG TGTTTGAATA CCTGGATTTT ACCAATGCGG ACCCGGTTTA TCGTGAGGAA
CTTGTCTCCC GGGAACTGTC CCGTTACAAT TTTGACCGGC AGTGGCGTGG CCCGGTGTGT
GACATGGTGG ACCGGGTGCT TTCCACGCCC CTGCCCCCGG TGTCCGGCGG CGAGGGTGTC
CGGCTGGACT CGGTGCCCAT GGATTGCCGC ATCAACGAAC TGGAGTTTTT TTTCCCGTTG
CGGTCTGTTT CTCCGGAGAG CCTGGCCGCC GCCTACCGGC AGGCAGGGGC CGGGCCTGGG
AACGACCGGT TTTCCCATGC GCTGAAAGCC CTGGCATTTT CACCGGCCAG GGGGGTGATG
CGGGGGTTTG TCGACCTTGT TTTTTTCAGC GCCGGCCGGT ATTTCATCGT TGACTGGAAG
TCCAACCTTC TGGGACCGAA TCCTGAATCT TACAGTCAGA CCCGTTTGCG GGAAGTGATG
GAAAAGGAGT TCTACCTGCT TCAGGCCCAC CTGTATGCCG TGGCCCTGAA CCAGTATCTT
TCCGCACGGC TGCCGGCATA CGATTATGCG TCCGATTTCG GCGGGGTCTA TTACGTGTTT
CTGCGCGGTG TGGATCCGGC TGCCGGGCCG GACTACGGTA TTTACCGGGA AACGCCTTCC
GTGGAGTTGA TGCGTGCCCT GACACGGTGC CTGCTCGAAA CGGTATCCGC AAAGAAAGGG
GAGGGGCGTT AG
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| Protein sequence | MARREPFDIL CADLSGGITT LVEASAGTGK TYAIVGLFLR LIAETDAGVD NILAVTYTEA
ATQELKGKIR TALRKAATAF KTGTMSGDPL IDGLLKKRET TRAVAARRLK RALEAFDQAA
IFTIHGFCSR MLGEFAFESG VLFGAEMVTN QDELVQQVAR DFWRQRFYGA SPLFLDYAVG
EKGLCVDTFT RLLNNWMVFP DLRVVPGADE TVDTAALEAA FAASLEQVAA QWTADKAAVQ
EILLNSGGLR RNLYRADWLS GWFLRMDAYA GPREGLPSEF EQFKKFTTTG IAEGTKSGGT
VAHHPFFDTC QQHMEIRQAL TGAFDRRIAV EKSRFLGEAR KALDAQKQRL NIRYFDDLLL
NLDRVLVSDA RTGLIEKARH RYRAVLIDEF QDTDPLQYRI FSSLFQGASA LFFIGDPKQA
IYGFRGADVF AYLEAVPGVD VACTLAENWR SRAGLVTGVN TLFQAVAAPF VFDEINFAPA
APASGAQIPR LTIDGNEPAA LELRLMESDD FSTKTQKAAW IQLVARDTAA QAARLVALGR
EQKAWLGDRP LAAEDMAILV RRNTEAILVQ EALSRLNVHS TILKAGDLFG SHEAFEMQVL
LSAVAFAHDL SLVKGACATQ MMGHDARRIA GLSLEADTTD PVVERFLSYR DLWRRHGFMK
MFSRLLRREE VLPRLMAFPD GERRCTNLFH LAELLHRTAL EAHYGPERLV RWLMRQRTGL
QGRNEEHQLR LESDDSAVKI ITIHKSKGLE YPVTFCPYLW TGTPRTAGGD GVACHEPRED
GSLSMVLDLR SGDAEGVADR RERWYRETLS ENMRLLYVAL TRAKNQCYVS VVPEKADGSP
LAALLGTGEA GISADALERV AGQSGGSIHV TRVGPADLHA APLSAEDGGA EAKLSCRRFP
GTIAADWRVA SFSAMRRSFS GTEADHVAAD DGGVTPDPEL LSAPYTGIAQ FPAGARAGLF
MHEVFEYLDF TNADPVYREE LVSRELSRYN FDRQWRGPVC DMVDRVLSTP LPPVSGGEGV
RLDSVPMDCR INELEFFFPL RSVSPESLAA AYRQAGAGPG NDRFSHALKA LAFSPARGVM
RGFVDLVFFS AGRYFIVDWK SNLLGPNPES YSQTRLREVM EKEFYLLQAH LYAVALNQYL
SARLPAYDYA SDFGGVYYVF LRGVDPAAGP DYGIYRETPS VELMRALTRC LLETVSAKKG
EGR
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