Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_1054 |
Symbol | |
ID | 5693889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 1242199 |
End bp | 1245456 |
Gene Length | 3258 bp |
Protein Length | 1085 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641263651 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001528941 |
Protein GI | 158521071 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATTTTT TTACAAGTAA CCGCATGGAG ATGCTGTCCC GCGCCTTTTG CGAGGCCCTG ACGGCATATC CCCTGGACAA TCCTTTTGCG CGGGAAACCA TTGTTGTCCA GAGCATGGGC ATGAAGCGGT GGCTCTCCAT GGAGATGGCC CGCCACACCG GTATTTGCGC TCACAACCGG TTTCTTTTCC CCAACGCGTT TTTAAACCAG ATGCTGCAGA CCGCCTTTGC CGATGCGGTC CCGGTTTCTC CCGATGTGGG GGTGGAGGCC ATGACATGGG CCGTTTTTCC GGTCCTGGCC GATGTTTTTG CCCATCCCGC CCTTTCGCCC CTTCAGGCCT ACCTGCAGGA CGGCGATGTG ATCAAGCGGT ACCAGCTGGC GGCCCGGATT GCCGACACCT TTGATCAGTA CCTGGTGTTT CGGCCGGACA TGCTGCTGCA GTGGGAAGCC GGCGCGCTTC CCGCGGACCC CCATGAAAAG TGGCAGGCTC ACCTGTGGCG GCTTCTGATT TCCCAGGGCT GGGCCGAACA GCGGGCCGAA CGCTGGAAAC AGTTTCTCTC CCTGGCCCAG AGCGGGGCGC TTGCCGGCAG CACCCTTCCA TCCAGGGTGT CCGTGTTCGG CATATCAACG CTGCCCCGGT TCCATGTGCA GGTGTTTGCC GCGCTTTCCG CTTTCCTGGA GGTACGGTTT TTCGTATTGA ACCCCTGCCG TCACTACTGG GGAGACATCC TGTCCACCTA TGAAAAGAAA CAGGTAGAGA CAGGGGCCGA CGCCCGGGAT ATTCCGGAAG CGGCTCGCCA CCTGGAAACG GGTAACAGCC TTCTGGCCTC CATGGGAATG GTGGCCCGTG ATTTTTTTGC CATGGTGGAG GACCATCCCC ACCAGGAGAC CTCGCTGTTT GCTCCTGCCG GGGAGACCAC CATGCTGGCC TGCCTTCAGA ACGATATTCT GGACCTGAAG GATGCGGCTG ACCAGGAGCG GGTGCGGGTG GACGGAAATG ACGCCTCTAT GCAGATATCC GTCTGCCACA GCCCCATGCG GGAGGTAGAG GCGCTTCATG ACAACCTGCT GGCCATGTTT GAGGCGGATG CCGGCCTATC GCCCGAGGAT GTGCTGGTCA TGGCGCCGAA CATGGAGGTG TACGCCCCCT ATGTGGAAGC GGTGTTTGAT GCCGGTGCCG ACGATGGAGG ACAGCGGGTC CCTTACACGG TCACGGACCG CCGTTCAAAG TCGGGCAGCC CGGTGGTCAG GACTTTTCTG GGCCTGATGG ACCTCTGGGA ATCCCGCTTT GGAATATCCG CCGTGCTTGA AATTCTGGAA TCCGCCTTTG TCCGGGAGCG GTTCGATATC GGAGAGGCCG AGTTTTTTCG CATTTCCCAG TGGCTGGTCG ATGCGGGCGT ACGGTGGGGA CTTGACGGTG CCTTCAAGAC AGACCGGGAC CTTCCCGAAT TTTCTGAAAA CACCTGGAAG CAGGGCATCG ACAGCCTGGT GCTGGGATGC GCCATGGCCG GGAAGGGTGA AATCCTTTTT GACGGCCTGC TGCCCTATGA TCATATGGAG GGCAGTGACG TCGACAGCCT TGAAAAGTTT CTGGCGTTCT GGCATGTGCT GCTCCGGTTT TACCGGCAGT GCGGCGGCGC CCACGCCCCG GGCCGGTGGC GACAGATACT GACCGCGCTG GTGGAGTCGA TGTTTGCCGC GGACCCGGCC GTTGAGGCGG ACCTTCAGGT GATAACCGAT GCCCTGAACG CCCTTGGGGA AAGCGCGGCC CACGCCGGGT TTGACGGCCC GGTGGACCTC CCGGTGATCA GGGAATTTTT AAACCGCCGT TTCGAGGGCC AGGCCTACGG CGCGCCGTTT ATTTCCGGCG GCGTCACCTT CTGCTCCATG CTGCCCATGC GCAGCATTCC CTTTGCCGTG ATCTGTCTGC TGGGCATGAA CGTGGACGAT TATCCGCGGC AGACCTTTTC TCCCGGTTTT GACATGATTC GCAAACACCC CCGGCCCGGG GACCGCTCCA AGCGAAACGA CGACCGGTAC CTGTTTCTCG AGACCCTGCT GTCGGCCCGG CGGCGGCTCT ACATCAGTTA CGTGGGCCAT GATATGCGGG ACAACAGTGA CCGTCCGCCT TCGGTGCTGG TGGGCGAACT GTGCGACTAC CTTCGGGAAC GGTTCGACGC CGGCCCCTTG ACCGACGTGG TGGAAAAGAT CACCACCCAC CACCGGCTTC AGCCTTTTCA CCCGGACTAT TTCTCCAGCG ACACGCAAGC GCGGTTCAGC TATGCCGCTG ATTATCTGGC CGCGGCCCGG CAGCTGGCCG GCGGCCGACC GGGTCGGCCG GCCGCACTGG AACCGGCGGT CCCGGTCCCT GACAACGCGG ACCCCCAGAC CATTGAGGTG GAGGACCTGT GCCGTTTTTT CGCCCACCCG GCCCGCTATT TTCTGACGCA GCGTCTTGGC CTGCGCGTCG CCGAGACCGA CCGTATTCCG GAAGAGGCCG AACCGTTTGA GGTGGCCGGG CTGGAGCGGT ATGACATGGC CCGGCGGCTG GTAGAACGGC TGCTGGCTGA AGACCCGGCG GCACCACTGG AAAACGCGCT GCGGGCCAGC GGCATCCTGC CGCATGGTGA ACCGGGAAAG CGACTGTTTG AACGGTTGAA AACCGGGGCC GCCGGCTTTG TCGCCGGTGT TCGGGCGGTG ACAGCCAATG GTGGCCTGGA CCGCCGGGAG ATACGGCTGG ATATCAACGG CACCACCCTT TGCGGTACCC TGGATGGGAT CGGTGAACAG GAGTGGTTCC GGTTTCGGTA CGCAACGGCC CGGCCCGGTG ATTTTATCAC CAACTGGATC GCCCATCTGG CCTGGAGCGT GGACCAGGGC CGTGCCGGCT CAGGTCGGTT CGCGGCCAGG GATGGATGGT GGGCCTTTGA TCCGGTGGAT AACGGCCTGT CGATACTGGC GGCCCTGATT GAAATTTACC GGCAGGGACG CCTGCGCCCT CTCCATTTTT TCCCCCGCAG CGCTTTTGTC TATGCCGAAA CCCTGCAAAA AAAAGGCAAT GCGTCCATGG CCCTGGACCG GGCACTTCAG GCATGGCGGG GCAACGAACG GGTGGCCGGA GAAAAAGAGG ACCCTTTTTA CGCGCTCTGG TTTGCCGGGG ACGATCCCTT GGACGATGAA TTTGAAACCC TTTCCACGGC AGTGGTGACC CCGCTGCTGG CCTGCAGGAG ACCGGATGGC CCGCCGCGAA CCGTTTGA
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Protein sequence | MYFFTSNRME MLSRAFCEAL TAYPLDNPFA RETIVVQSMG MKRWLSMEMA RHTGICAHNR FLFPNAFLNQ MLQTAFADAV PVSPDVGVEA MTWAVFPVLA DVFAHPALSP LQAYLQDGDV IKRYQLAARI ADTFDQYLVF RPDMLLQWEA GALPADPHEK WQAHLWRLLI SQGWAEQRAE RWKQFLSLAQ SGALAGSTLP SRVSVFGIST LPRFHVQVFA ALSAFLEVRF FVLNPCRHYW GDILSTYEKK QVETGADARD IPEAARHLET GNSLLASMGM VARDFFAMVE DHPHQETSLF APAGETTMLA CLQNDILDLK DAADQERVRV DGNDASMQIS VCHSPMREVE ALHDNLLAMF EADAGLSPED VLVMAPNMEV YAPYVEAVFD AGADDGGQRV PYTVTDRRSK SGSPVVRTFL GLMDLWESRF GISAVLEILE SAFVRERFDI GEAEFFRISQ WLVDAGVRWG LDGAFKTDRD LPEFSENTWK QGIDSLVLGC AMAGKGEILF DGLLPYDHME GSDVDSLEKF LAFWHVLLRF YRQCGGAHAP GRWRQILTAL VESMFAADPA VEADLQVITD ALNALGESAA HAGFDGPVDL PVIREFLNRR FEGQAYGAPF ISGGVTFCSM LPMRSIPFAV ICLLGMNVDD YPRQTFSPGF DMIRKHPRPG DRSKRNDDRY LFLETLLSAR RRLYISYVGH DMRDNSDRPP SVLVGELCDY LRERFDAGPL TDVVEKITTH HRLQPFHPDY FSSDTQARFS YAADYLAAAR QLAGGRPGRP AALEPAVPVP DNADPQTIEV EDLCRFFAHP ARYFLTQRLG LRVAETDRIP EEAEPFEVAG LERYDMARRL VERLLAEDPA APLENALRAS GILPHGEPGK RLFERLKTGA AGFVAGVRAV TANGGLDRRE IRLDINGTTL CGTLDGIGEQ EWFRFRYATA RPGDFITNWI AHLAWSVDQG RAGSGRFAAR DGWWAFDPVD NGLSILAALI EIYRQGRLRP LHFFPRSAFV YAETLQKKGN ASMALDRALQ AWRGNERVAG EKEDPFYALW FAGDDPLDDE FETLSTAVVT PLLACRRPDG PPRTV
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