| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1041 |
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| Symbol | |
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| ID | 5693876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1225639 |
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| End bp | 1228038 |
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| Gene Length | 2400 bp |
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| Protein Length | 799 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641263638 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001528928 |
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| Protein GI | 158521058 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0180927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATATG GCATAAGGCA ACTGGTATCT GTGGCGGTCT GCACGGGCGT ACTGCTGGGC
GTTTACCCCC TGGCGGCCGA AGAGCCGGCC CCGGGCCCGG CCCTGCTTCA AAGGATTCGG
GAACGGAGAG ATCTGCCGGT GAAACGTCCC CAGCCGGTTC GGAAAACGTT AGTGGACCAG
GTCTCGGACG CGCCCTCCTT GCCGGAGGGG TTGCCGACGG CTGCCGATGA CGGAGAGAAC
CTGGTTTCCG TGGATTTCAA TGATGTGGAC CTGGCGGTTT TCATCAAGTT CATCAGCGAG
GTTACCGGTA AGAATTTTGT GCTTGACCAG AACGTGCGCA CCAAGGTCAC AGTGATCAGC
CCTTCCAAGA TTCCCGTGGA AGAGGCCTAC CGGGTATTTG AGTCGGTGCT GGAGGTGTAT
GGATTTGCCA CGGTGGAGGC GGGCGACATT ATTAAAGTGG TCAAGGCGGG TGACGCCCGG
TCCAAGAGTA TCGAAACCGG TCTGGTAAAA GAGGGCAGAG CGCCGGACGA TAAACTGGTG
ACCCAGATCA TTCCCCTGCG GTATGCCGAT GCCAATGAGA TCAAGGGGCT TTTCACCCCC
CTGGTTTCCA AGGACAGCGT GCTGCTGGCC TACCCCTCCA CCAACATGCT GATTCTCACC
GACGCCTATT CCAACATTCA GCGGCTGATG AGAATTCTTG ACGCTATTGA TGTCACGGGC
ATCGGCCGGC AGGTGTCCGT GATTCCGCTG GAATACGCCG ACGCGTCAAA AATGGTTTCC
ATTCTGGAGG TGGTGTTTAG GGAGGCGGTG GACCGGGGCG GACCCCCGCA GCGGGGTGGC
ACCGAACCCA CGGACAAAAT CCGGCTGGTG GCTGATGATC GGGCCAACGT GGTGATCATG
CTGGCCAGTG AGTCGGAAAC CGTTAAAATA CGGAAGCTGA TCACCCTGCT GGACAAGAAA
GTGCAGCAGG GCAAGGAACG GATTCATGTC TACTACCTGA AGAATGCCGA TGCCGAGGAG
CTGGCCAAGG TTCTGCAGAT GCTGCCCGAG AAACAGGGGG ATGCAACTGC CGAGGGCAAA
AAACTGGCGC CGGTGCTCTC AAAGGCCATC AACATCACGG CCGATGCTTC CACCAACAGC
CTGATCATCA TGGCCGAGCG GGACGACTAC CTGGTGCTCA AGGAGATTAT CGAAAAACTC
GACATTCCCC GGTCCATGGT CTATATCGAG TGCCTCATTG CCGAAGTGAA CATCAACAAG
GATTTTGAAC TGGGCGCCGA ATGGCTTGTG GGTGGTAAAG GCAGTTATGA TGACAAGGAC
GGGGGATACG CCGTGGGGTT CGGTGGTGGC AGCGACACGG GCTATGCAAA CGTGGCACGC
ATGGCCATGG GCGGGCTGCC CAGCGGGTTT TCCGTGGGGG CCATGGCCGA ATCCATCGTG
GTAGGCGGCA TCGAGTATCC CAACCTGGCC GCGGTGGTGC GGGCCTTTAA GAAGGACAAG
GATGTTCAGA TCCTGTCTAC TCCCCAGATC ATGACCACGG ACAACCAGGA GGCCACCATC
ACGGTGGGTA AAAACATTCC CTACCTGACC AAGATCGGCA CCACCTCCTC GGAAGAGACC
TACAGCAATT ACGAGTACAA GGATGTGGGC ATCTCCCTGA AGATCAAACC CCAGATCAAC
GAAAACCGGC TGATCCGGCT GGATATCGAA CAGGAGCTGA CCAAGCTGGA CCAGCTGACC
ACTGTCTCCT TGGACCGGCC GGCCACGTTG AAACGCGGTA TCACCACCAA CGTGATCGTT
CATGACGAAC ACACCATCGT CATCGGCGGG CTGATTGACG ACAGCATGTC CCGGGTGGAG
TACAAGGTGC CCTGCCTGGG AGATATTCCG TTTCTGGGAT GGTTGTTCAA GGGGCTTTCC
CGATCCAGCG AAAAGACCAA CCTGCTTGTA TTCCTGACCC CCCATGTGAT CAAGACGGCG
CGGGAAGCGG ACAATATCTA TCAACAGAAG CAGGGCGATC TGGATGCGGT TCGCGGCGGC
AGTTTTTCCC TGTATCCGGA TGCCAGGGAG GATGCTTCTG CGATTGATGT CACGCCGGTA
TCTTCATCGG ATACGACACC GGCGGATGAT GCCCATCAGG AAAACGAGGG GGAAGATATG
ACAGCGGCGG GGGTGGTCGT GACCGAAGGA GACGGTGTGG ACCGACCTGA ACCCATGCCG
GAAAAAGCGG TGGCCGCCCC GGCTGCATCT GAAGCCGATG CCGCCGAGGC CAAGCCTGTG
CCTGAAACCG CCCCGCCGGT GACCGGCGGG ACAGAGGCGG ACGGGGAGAC CTCACCTTCC
GTGGAGGCGC AGCCGGACGG GGACCTGCCG GTTCCTTTAT CGCCGGAAGC GGGGTCATAA
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| Protein sequence | MKYGIRQLVS VAVCTGVLLG VYPLAAEEPA PGPALLQRIR ERRDLPVKRP QPVRKTLVDQ
VSDAPSLPEG LPTAADDGEN LVSVDFNDVD LAVFIKFISE VTGKNFVLDQ NVRTKVTVIS
PSKIPVEEAY RVFESVLEVY GFATVEAGDI IKVVKAGDAR SKSIETGLVK EGRAPDDKLV
TQIIPLRYAD ANEIKGLFTP LVSKDSVLLA YPSTNMLILT DAYSNIQRLM RILDAIDVTG
IGRQVSVIPL EYADASKMVS ILEVVFREAV DRGGPPQRGG TEPTDKIRLV ADDRANVVIM
LASESETVKI RKLITLLDKK VQQGKERIHV YYLKNADAEE LAKVLQMLPE KQGDATAEGK
KLAPVLSKAI NITADASTNS LIIMAERDDY LVLKEIIEKL DIPRSMVYIE CLIAEVNINK
DFELGAEWLV GGKGSYDDKD GGYAVGFGGG SDTGYANVAR MAMGGLPSGF SVGAMAESIV
VGGIEYPNLA AVVRAFKKDK DVQILSTPQI MTTDNQEATI TVGKNIPYLT KIGTTSSEET
YSNYEYKDVG ISLKIKPQIN ENRLIRLDIE QELTKLDQLT TVSLDRPATL KRGITTNVIV
HDEHTIVIGG LIDDSMSRVE YKVPCLGDIP FLGWLFKGLS RSSEKTNLLV FLTPHVIKTA
READNIYQQK QGDLDAVRGG SFSLYPDARE DASAIDVTPV SSSDTTPADD AHQENEGEDM
TAAGVVVTEG DGVDRPEPMP EKAVAAPAAS EADAAEAKPV PETAPPVTGG TEADGETSPS
VEAQPDGDLP VPLSPEAGS
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