| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1040 |
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| Symbol | |
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| ID | 5693875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1224707 |
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| End bp | 1225588 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641263637 |
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| Product | PDZ/DHR/GLGF domain-containing protein |
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| Protein accession | YP_001528927 |
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| Protein GI | 158521057 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000638276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAAAA GGGGTGTTGT CATCGCGAAT CTGCTGCTGA TCATGCTGGC GGCCTATATG
GGCGTGGACC TGTTTTACGG CATGGTGACA GCCCGGTTCA GCATGAATGC CGTTTCAGCG
ACGCCGGGAA CCCGGAATCC GGCCTCCGAT CGTCCCGCTG TCACCCGGCA ACCCGTTTCC
GCCTATTCGG CCATTGCCGG GCGCAACCTG TTCAAGGCCA CCAAAAGCGA AGTGGCCGTA
CAACCGGAAA TCGACGTGAC CAGCCTGAAG AAAACCGACC TGGCCTTAAC GCTGGTGGGC
ACCATCTCGG GCATGGGCAA GGATTCATAC GCCATTATCG AGCGGACCCG GGAGCGGCAG
CAGGACCTTT ATAAGGTCGG GGATACCGTT GATAACGCAA CGGTGAAGCT GATTCTCCGA
AAACGGGTGG TGCTGACCGT CAACGGGGTG GATGAGGTCC TGGAAATGAC CGACGCGCTT
TTTGCCGAGG ATGCGGGACG GAGTCGTTTC AATCCGGCGG CTGCCGGCCG CCGGGCCAGT
GGACTGGACA GGGCCGCCAG TGTGCGCAAC GTTACACTGG ATCGCAGCGA AATGGAGAGC
GCGTTCAACA ATGTCAATGA TCTGATGCGA AGTGTCCGCA TCCGTCCTCA CTTTACCAAC
GGTCAGCCCG ATGGCCTCAG CCTGGAGAGC GTGGCACCGG ATTCTATCTT TCAGGAGATG
GGGTTGCAGA GCAAGGATGT GATCGTGGGG GTAAACGGGA AAAAGATCAG CACCGTGGAT
GACTGCATGG AGGTTTACAA GAGCCTGAGT GACGCGTCGG CTGTGGTGCT TGAGGTCAAC
CGGGGCGGAC AGCGGGAGTT GATCCATTAT AACGTTCAAT AG
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| Protein sequence | MIKRGVVIAN LLLIMLAAYM GVDLFYGMVT ARFSMNAVSA TPGTRNPASD RPAVTRQPVS
AYSAIAGRNL FKATKSEVAV QPEIDVTSLK KTDLALTLVG TISGMGKDSY AIIERTRERQ
QDLYKVGDTV DNATVKLILR KRVVLTVNGV DEVLEMTDAL FAEDAGRSRF NPAAAGRRAS
GLDRAASVRN VTLDRSEMES AFNNVNDLMR SVRIRPHFTN GQPDGLSLES VAPDSIFQEM
GLQSKDVIVG VNGKKISTVD DCMEVYKSLS DASAVVLEVN RGGQRELIHY NVQ
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