| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1009 |
|---|
| Symbol | |
|---|
| ID | 5693844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1186967 |
|---|
| End bp | 1188874 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641263606 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001528896 |
|---|
| Protein GI | 158521026 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000685319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC TTTATTTTTC CAAGAACGTG GTGATCGTGG TGGTGGTGGA CGCGCTGCTT
TTTTGTTGCG CTTTCTACCT TGCCTACCTG CTGCGTTTTG ATTTTCACAT TCCCCGATTT
TATCGGGTCC CGTTTCAGCA GGTCCTTCCC CTGGTAATCC TGCTGAAGCT GGCCTCTTTT
TACTGGTTCG ACCTTTACCG GGGCATGTGG CGTTACACCA GCCTTTCCGA CCTTTTTAAC
ATCGTTAAAG CCGCTTTGAT AACCAACCTG GTGATTGTGG GGGGGCTGCT GTTTTTCAAT
CGGTTCCAGG GATTTCCCCG TTCGGTTTTC CTCATCGACG CGCTGCTTAC CATTCTGACT
GTTTCCGGGT TTCGCATCCT GATCCGTATC TATTTCGAGC ACGCCGCAGG CGACAAGATG
AGCCAGGTGG TGAAGAAAGC CTTTTCCCAG GTCTTTTCAA AAACTGACGG CCACACCCGT
CGCGTGATCA TTCTGGGCGC CGGGGACTGC GGGGAAAAGA TATATCGGGA GATCGCCCAT
AATCCTTCCC TGGGTTTTCA GGTGGTGGGA TTCCTTGATG ACAACCCGGT AAAGGTGGGT
AAAAAAATCC ATGGCCTGCC CGTGCTGGGA GAAATTGCCG GGGTGTCCAA GTTTGTGGCC
CGCCTGTCCA TTGATGAACT GATCATTGCC ATTCCTACGG CCACACCGGA ACAAATGCGC
ACCATCGTGG CGCTTTGCGA GAAGAGCGGC ATTCCTTATA AAACCGTTCC GGGTTTTAGC
GAACTGTTAA ACGGTACGCC ATCTGTCGCA GCCCTGCGCA AGGTGGCCTA TCGGGATTTG
TTGGGCCGTG AGGTGGTGCG ACTGGATAAG GAGGGTATCG GCGCCTACCT GGCGGGAAAA
ACCGTTCTGG TCACCGGCGC CGGCGGTTCT ATCGGTTCGG AGTTGTGTCG CCAGATACTT
GAGTTTTCTC CCGGACGGAT TGTGCTGTTT GATCGGTCCG AAACGGCACT TTATGAGATC
GACCTGGAAC TCAAGGGGCA GCGCCGCGAC ACCGGGCTTC GTATTTCCCC GGTGCTGGGT
GATATTCAGG ACCAGCGCCA GCTTGAACAC CTGTTTCAAC TGACAGCCCC CCATGTCGTG
TTTCACGCGG CCGCTTATAA GCATGTCCCC ATGCTGGAAG CACACCCCTG GAAGGCGGTA
AAAAACAATA TTATCGGTAC ACGGAACCTG GTGGAACTTT CCAAACGATT TGCCGTGGAA
CGATTCGTGC TGGTCTCAAC GGACAAGGCC GTGCGGCCCG CCAATGTGAT GGGGGCCTCC
AAGCGGGTGG CTGAACTGCT GCTTCAGTGC GGTAACGGAG GTGCCCCCTG CACCACGCAG
TTCATGATCG TCCGGTTCGG AAACGTTCTG GGCAGCGCCG GCAGCGTGAT TCCCCTGTTC
CAAAAACAGA TTGGAAAAGG CGGCCCGGTC ACCGTGACCC ATCCGGAGGT GACCCGTTTT
TTTATGACCG TTTCCGAGGC GTGCCAACTG ATTCTTCAGG CCGGCGCCAT TGGCAACACG
GGCCGGGGCA GGGCAGAAGT GTTTGTCCTC AAGATGGGAA CGCCGGTTAA AATAGTGGAC
ATGGCCCGGG ACCTGATCCG TCTGTCCGGC CTGGAGCCGG ACAAAGACAT TTCCATCGAA
TTTGTCGGGC TTCGGCCCGG GGAAAAGCTG TATGAAGAAC TGATCGTTGA AGGTGAAGGT
GTGGTCCCCA CCGAGCACGA GAAAATAATG GTGCTGCGAG GAGCCGAGGC CCACGCCGCC
GTTCTCAATG GTGCCATTGA AGAACTGGAG CGGTCTGCTG AACTCCAGGA TGGGGGCGCG
ATAAGGGTCT GGCTGAAAAA AATCGTCCCC GAATATGAAC CCGCTTAA
|
|---|
| Protein sequence | MKKLYFSKNV VIVVVVDALL FCCAFYLAYL LRFDFHIPRF YRVPFQQVLP LVILLKLASF
YWFDLYRGMW RYTSLSDLFN IVKAALITNL VIVGGLLFFN RFQGFPRSVF LIDALLTILT
VSGFRILIRI YFEHAAGDKM SQVVKKAFSQ VFSKTDGHTR RVIILGAGDC GEKIYREIAH
NPSLGFQVVG FLDDNPVKVG KKIHGLPVLG EIAGVSKFVA RLSIDELIIA IPTATPEQMR
TIVALCEKSG IPYKTVPGFS ELLNGTPSVA ALRKVAYRDL LGREVVRLDK EGIGAYLAGK
TVLVTGAGGS IGSELCRQIL EFSPGRIVLF DRSETALYEI DLELKGQRRD TGLRISPVLG
DIQDQRQLEH LFQLTAPHVV FHAAAYKHVP MLEAHPWKAV KNNIIGTRNL VELSKRFAVE
RFVLVSTDKA VRPANVMGAS KRVAELLLQC GNGGAPCTTQ FMIVRFGNVL GSAGSVIPLF
QKQIGKGGPV TVTHPEVTRF FMTVSEACQL ILQAGAIGNT GRGRAEVFVL KMGTPVKIVD
MARDLIRLSG LEPDKDISIE FVGLRPGEKL YEELIVEGEG VVPTEHEKIM VLRGAEAHAA
VLNGAIEELE RSAELQDGGA IRVWLKKIVP EYEPA
|
|---|
| |