| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0954 |
|---|
| Symbol | |
|---|
| ID | 5693789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1110827 |
|---|
| End bp | 1111879 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641263551 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001528841 |
|---|
| Protein GI | 158520971 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00136407 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA ACCATAAACT CCTTGTTGTC TTTTTTATCG CTATACTGTC TTTGCTTCAG
GCATGTTCAT CTTCTTTTGA TGTGGAAGAA CGAAATTTAG AAATAAAGAA TATACTTGAT
AACTATAGAG GCAACACTGC TGACTTGAGG GCGGCTTACA AACTGCTGAG GCCTTTATTA
GAGAAGTATC CGAAGAATGC TATGGGATTT GTGAATTTAT GTCGCCTTAT CACCAAAGCG
GGGTATATTC AGGGCGATGA GTATGACCCC GGCGCATTGG AAAAAGCCGA AAAAGCGCTT
GACCAGGCAG TCGCCCTGGA TCCGGAATTG TTTGACGCCT ATTACCACGG CGTTTTTCAT
TATATTCGCA GGAATAATCT CGAGAAAGCC AGGCAGTTCA CCTTAAAGGC ACAGGAACTC
AGGCCGGGCT CAGCCAAAAC AGACCTTCTG TTCTGCGAAC TTGCCCTGGA GGAAGATAAC
CCTGAAGAGG TGATTCGACG GGCAAATTCC GCGATTGCCA ACTCGAATGA TACAAGTGTT
CTCCATGACG CCTACTTCGC CTTATCCAAA ACATATAAAA AAAGAAAGGA ATACGAAAAA
GTAGTTAACA TTTACAGGAA AACCATCGAA ATCTTTCCTG ATGACCCATG GAACATGGAT
GCCTACGCGG CCTTTCTCCT TTATCACATG GAAGATTACG ACAAGGCCAT TGAATACGCC
CGGAGGGCAC TTGAGATCAT GGACTTTGGT ATGGCGCGGA AACATTTAGG CCAAGCTTAT
TACAAAAAGG CCGCCACACA GTTATGGGAA GACAAACAAT ACGAGGCTGC AGCAGAAAAT
TTTCTGTCAG CCGCCCAATA TCACCCAACC GCCAACGCCT ATTACGGTCT TGGTATATCA
TATTGGTATT GGGGTCACCA TACGCGACAG GTGGAACTGC TTCGGGAAGC GGCAAAAGCG
TTAAATCAAG CCCTTGAAAT GGACCCCTCG CATGAACAGG CCAGAAAACA GCTTGACGAT
CTGCAGGGAC AGCTTACAAA ATTTGATACG TAA
|
|---|
| Protein sequence | MKINHKLLVV FFIAILSLLQ ACSSSFDVEE RNLEIKNILD NYRGNTADLR AAYKLLRPLL
EKYPKNAMGF VNLCRLITKA GYIQGDEYDP GALEKAEKAL DQAVALDPEL FDAYYHGVFH
YIRRNNLEKA RQFTLKAQEL RPGSAKTDLL FCELALEEDN PEEVIRRANS AIANSNDTSV
LHDAYFALSK TYKKRKEYEK VVNIYRKTIE IFPDDPWNMD AYAAFLLYHM EDYDKAIEYA
RRALEIMDFG MARKHLGQAY YKKAATQLWE DKQYEAAAEN FLSAAQYHPT ANAYYGLGIS
YWYWGHHTRQ VELLREAAKA LNQALEMDPS HEQARKQLDD LQGQLTKFDT
|
|---|
| |