| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0951 |
|---|
| Symbol | |
|---|
| ID | 5693786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1107407 |
|---|
| End bp | 1109122 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641263548 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001528838 |
|---|
| Protein GI | 158520968 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00021324 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGTC GGATAAAATT ATTTTCAAAC ATTAAAAACA GTTATTTTCT TTCTGCTTCT
GTTTTTCTCC TGCTTTTCGC TCTCGGAATC TTTATGTTTT TTCCGCTTTT TCGAATCGGA
ACACCCGGCC GTTCTATCCC TTTGGCCGGC CAGTGGAAAA TATCTCTTAA CGATTCGACT
GCGTTTTCCT TTGCTGAATA TGACGACACC GACTGGGGTA CCATTGACCT GCCCGGAAAA
GTCGTTCCTT ATTCTATAGA GCAAAACAGG GGCATACGCG GCACATGCTG GCTGCGAAAA
ACATTTTTTT TAGAGGATGC GCCCGGCGAC TACGGCCTTA TACTGGGGAG AATCGCCAAC
GCGGACCAGA CCTATCTCAA CGGCGAAAAA ATCGGTGAAA CCGGCCGGTT TTTCCCCAAC
ACGTTTTCCA TGTGGAACTA TCCCAGAAAC TACCTGCTGC CGGACCGGCA TCTGCGGCGG
GGCGGCCAAA ACGTGATTGC CGTGCGGGTC TCCTACGATG TCATCGGCGA AGTGATGGGG
AACCTGATGA TTGTCGATGC CGGCTATTTA AGACGGTACA CACCCTTTGC CCGGTTTATT
CATGTCACCA TCGGATACGC GGCCATCAGC ATCGGGCTTG TGCTGGTGCT GGCCTTTCTC
TTTTCCCGGT TCCGGTACCT GACCTTTGAT GAAAACTATC TTTATTTTTT GCAGTTTTTT
GCCGGCCTGC CCATTGTGCT TGACCTCTGT CTCACCTGGG AGGTTTATCC GGACCACACC
ACCCGGCTCA AGGTGCTGGG CCTTTCCTGG GTGGCCATCA ACGTGTTTCA TCCCGCGTTT
CTTCACCGGT TTTACCGGCT GAAAAGAAAA TGGCCGGAAC GCATCCTCTG GACCTATCTG
GCCGCCTGCC TTCTGGGTGC GGTGTTCTGC ACGCATGCAG GCAATATCCG TCCCATGGCC
ACCCTGCTCA TCGGTGTCAC CTGGTGCATC GGGTTTTACA ACATGTCCTG CCATATCGAG
GCCCTGGTCA GAAAGCGGGA CCACGCAAAA ATATTCAGTG TTTTCGGCAT TGTCACCATT
CTGGCCGCCA TGAACGACGG GTGGTGCTAT TTCAACAAGT TCGTGGATTT CAACGTCACG
GTATTCGGCT GGGCCCCCAC GGTCATGGTG ATTCAGACCG GCGCCATCTT TCTTTACATG
GGCACCTTTC TTGTGCTGGA GACAAAATAC AGGGAGATGG TGGAGGAGGT GGACGACCTG
AACCGGAACC TTGAGAATTT TGTTCTTGAA AACGCCTTTC TGACCATGGC CGTAAAACAG
AGCCGAGCCC CGAAATCCGG CCCGTCTCGT ATCACGCCCC AGGCCGAGGA AAAGATTCAG
GCCGCCATCG ATATCATCGG GGAGAACTAC CTGTCCGAAC TGTCAAGAAC CGACCTTGCG
AAGACGCTGG ATGTCAGCCC GGACAGCCTG GGCAAACAGT TCAAACAGTA CACCGGCAAA
AAGCTGGGGG ACTACATCAA CGAGCTGCGC ATTCACGAGG CGGCCCGGCG CCTGCGCGAG
ACCGACGACA AGGTGATCCA TATCGCCTTT GATACCGGGT TTGAAAGCCT GCGCACCTTC
AACCGGGTGT TTTCAAAGCT CATGAACACC ACCCCGGCCC AGTACCGGCA GGAAACCGTT
CCTGATGAAG GTAAAAGCGC GGTGCCGGGG AATTAA
|
|---|
| Protein sequence | MTGRIKLFSN IKNSYFLSAS VFLLLFALGI FMFFPLFRIG TPGRSIPLAG QWKISLNDST
AFSFAEYDDT DWGTIDLPGK VVPYSIEQNR GIRGTCWLRK TFFLEDAPGD YGLILGRIAN
ADQTYLNGEK IGETGRFFPN TFSMWNYPRN YLLPDRHLRR GGQNVIAVRV SYDVIGEVMG
NLMIVDAGYL RRYTPFARFI HVTIGYAAIS IGLVLVLAFL FSRFRYLTFD ENYLYFLQFF
AGLPIVLDLC LTWEVYPDHT TRLKVLGLSW VAINVFHPAF LHRFYRLKRK WPERILWTYL
AACLLGAVFC THAGNIRPMA TLLIGVTWCI GFYNMSCHIE ALVRKRDHAK IFSVFGIVTI
LAAMNDGWCY FNKFVDFNVT VFGWAPTVMV IQTGAIFLYM GTFLVLETKY REMVEEVDDL
NRNLENFVLE NAFLTMAVKQ SRAPKSGPSR ITPQAEEKIQ AAIDIIGENY LSELSRTDLA
KTLDVSPDSL GKQFKQYTGK KLGDYINELR IHEAARRLRE TDDKVIHIAF DTGFESLRTF
NRVFSKLMNT TPAQYRQETV PDEGKSAVPG N
|
|---|
| |