| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0890 |
|---|
| Symbol | |
|---|
| ID | 5693725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1040978 |
|---|
| End bp | 1042591 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641263487 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001528777 |
|---|
| Protein GI | 158520907 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTATCAG CAGAGGCCGT TTATCCGGCC AGCCGCCGGC TTTCCGGAGA CCATTTTTTT
TCCCGGTGCC TGGAAAAATG CGGGGATCAT CCCGAAGCGC TGGCCGATGT AATGGCCCGT
CTAACAGGCG AGTATGGTCT ACCATCTTAC CTGACCGAAC TGGCACGTCT GGAGTACGCG
CTTTTTCGGG CCGGTTCCGC CGCCGATCAA ATCCCCTCTC AGGTATCCGA GATAACAATC
AACCCTACCC TGGAGCTGTT GTCGTTCCAG TGGAAAAATC TATGCCGGCT GCTGACTTCC
GGGAAAGAGG TTCATCCGGA AGCGGCCGAA GAACGGGTCC TGGTCTGGGT CGACCCGAAA
ACAGGGAAGC CCCTGGCGCG ACCGGCTACG AACAATGATC TGCTGGCACT GAAAATCGTG
GCGGAAAGAA TCCCGGTGGA AAAGGCGGCC GGGGAGGGCG CCATTCTGCC GGGAGAAATC
TGGTTCCGAA TCCGGGCTGC CGCCCGCAAA GGCCTGATAC TGACGCCGCC CAGTGCTATT
GTTCGCGACC CGGCCATCTT TCCCCGCGAC GCCGGACTGT CACCGGAAAT CTATACCTCT
CCGGTTTTTA CGCTGCAATG GCATATTACC CAGGCCTGTG ACCTGAACTG CAAACACTGC
TATGATCGGA AGGAAAGCGA GCCCCTGCCC TTTGACCGGG GAGTGGCCGT TCTGGATGAT
TTTACCCGGT TCTGCATGAC CAGAAACGTC AGCGGTCATA TTTCTTTTTC CGGGGGCAAC
CCGCTGCTGT ACCCTCGTTT CTGCGACCTT TACCGGGAAG CCTCCCGAAG AGGGTTTTCC
CTGGGCATTC TGGGAAACCC GACCGAGCCC GGGCGGATCG AAGAATTAAT CCGCATTGAA
AAACCCGCTT TTTTTCAGGT CAGCCTGGAA GGGCTGGCCG AACATAACGA TTATATCCGC
GGGCCGGGCC ATTTTGAGCG GACGCTGGCT TTTCTGGAGG TCCTGCGGGA CCTGGGCGTT
TTCAGTATGG TCATGCTGAC CCTGACCCGG GACAATATGG ACCAGGTGAT TCCCCTGGCA
GAAATGCTGG AAGGCCGGGC CGACCTGTTT ACCTTCAACC GGCTGGCCCA GGTCGGGCGG
GGAAAAGACC TGCTGCTGCC GGAGAAAACC GCCTACCTGT CATTTGTGCG GGAGTTTATT
CAGGCTGCGG ACAGGCTGTC CGTTCTGGCC AGAAAGGACA ACTTGATCAA TGCCGTCCTG
TATGAGCAGG ACCGGTCTGT TTTCGGGGGA TGCACCGGTC ACGGCTGCGG CGCCGCGTTC
AACTTTATCT CCCTTCTGCC CGACGGTTCG GCCCACGCCT GCCGAAAGTT CCCCTCGCCC
ATCGGCAATG TTTTTTCCGA CACCATTGAG GCCGTCTATG ATTCGTCGAC GGCCGAGCAA
TACCGGGCCG GCGCCGCCGC CTGCCGGGGA TGCCCCGTAC GGTGCGTGTG TGGAGGCTGC
CTGGCCGTAG CTTACGGCCA TGGCCTGGAT GTGTTTTCCG AAAAAGATCC CTTTTGCCCG
GGGCCTCCTT CCGCAAAAAA CCGGCTGCCC GGTCCGGACC CTGCCGGACG CTAA
|
|---|
| Protein sequence | MLSAEAVYPA SRRLSGDHFF SRCLEKCGDH PEALADVMAR LTGEYGLPSY LTELARLEYA
LFRAGSAADQ IPSQVSEITI NPTLELLSFQ WKNLCRLLTS GKEVHPEAAE ERVLVWVDPK
TGKPLARPAT NNDLLALKIV AERIPVEKAA GEGAILPGEI WFRIRAAARK GLILTPPSAI
VRDPAIFPRD AGLSPEIYTS PVFTLQWHIT QACDLNCKHC YDRKESEPLP FDRGVAVLDD
FTRFCMTRNV SGHISFSGGN PLLYPRFCDL YREASRRGFS LGILGNPTEP GRIEELIRIE
KPAFFQVSLE GLAEHNDYIR GPGHFERTLA FLEVLRDLGV FSMVMLTLTR DNMDQVIPLA
EMLEGRADLF TFNRLAQVGR GKDLLLPEKT AYLSFVREFI QAADRLSVLA RKDNLINAVL
YEQDRSVFGG CTGHGCGAAF NFISLLPDGS AHACRKFPSP IGNVFSDTIE AVYDSSTAEQ
YRAGAAACRG CPVRCVCGGC LAVAYGHGLD VFSEKDPFCP GPPSAKNRLP GPDPAGR
|
|---|
| |