| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0888 |
|---|
| Symbol | |
|---|
| ID | 5693723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1038247 |
|---|
| End bp | 1040190 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641263485 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001528775 |
|---|
| Protein GI | 158520905 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATAC AGGCCATACA TTCCACACGG TTCAAACTGA TCGTCAACTT TCTGGTTGTC
TGTTTCCTGG TGGGCGGCAC ATCCCTTTTC ATCGGCGGCC ACCTGCTTTA CAACGCCGTT
GTCCGGGAGG CGGAAAGCCA GGTGAAGCTG GCCCTGAGCG CCACCCGGGA CGTGTACAAC
ACGCAAATCC GGTACGTCAA CGTGGCCCTG AACATCACCT CCCTGGGATC GGGGTTCAGA
ACCGCCTTTT TTGAACATGA CATTGCGGAC CTGCGGACCC GGCTGGAGCG GCTGAAGCAG
CACGCGGGCC TGGATTTCGT CGGCGTGGTA ACCGCCACCG GCCAGCCCCT GTGCCGGACC
GGGCCCAATG CCGTGCCCGG AACAACCGAG CCCGCCCTTT CGGTGGACAA CACCATCGCG
CGGTATGTGA CCAGCCACAA GGAGGCGGTG GCCGGAACGG TGGTTCTGCC CCGATCCTTT
CTCCATATTG AAAACCCCGA CCTTGCCGAA CGGATTCAAT TTTATTCCAC CGGCACCGAG
GGCCGGGACA TGGCCTGCCT GGCCATTGCG GCGGCCATTC CGGTGTTTGA GAATACCTCT
TCCGGAGAGA TCGCCGGCGC CCTTTACGGC GGCATCGTGC TGAACCAGAG CACCGACCTG
GTGGACATGG CGCGAAAGAC CTTCTTTCTT GATGAAATTC AGAAAAAGAT TGATGCCCCG
ACCGTGACCC TGTTTTTTGA TGATGTCCGC GTGGCCACCA ATATGACCGA TGAAAAGGGG
CTGCGGGCCA TCGGAACCAG AGCGCCCGAA ACGGTCCGGC AGGACGTGCT GACCATGGGG
AAACAGATCA CCACGCGCCT GCCCCTGGCC GGCAAATGGC ACATGGCCGC CTACCAGCCC
ATCGAAGATA TTCTGGGCCG ACGGGTTGGC ATGATGGGCA TTGCCGTGCC GGAGTCCACC
TATACGGGGG TCCAGAAGAA AATTTTCTTC TTTTTTCTGC TGGCCACCTG CATCGGGGCC
TGCGTCGCCA TCGGCATGGG GTATCTTCTG GCCTACCAGA TCATGCGGCC GATACACCGG
CTGATAAAGG CCAGCCAGGA GGTCTCCGAG GGCAGCCTCG CCCCGGATAT CGGCGCCATA
TCCAGGGACC CGGAAATCGC GATCCTGCAG AAAACCTTTC AGCACATGAT CGAAAAAATG
AAGCAGCGGC GCATGGAGAG CCAGGACAAG ATATTTCAGT CGGAAAAGCA GGCCAGTGTG
GGCCGGCTGG CCGCCGGCGT GGCCCATGAG ATCAATAACC CCCTCACCGG CGTGCTGACT
TACACCCACA TGCTGCTGCG GCGAAACGAC CTGGCCGACG ATGTCCGGTC CGACCTGACG
GTTATCGTCG AATCCACCGA GCGGGTGAGA AAAATCGTCA AGGGACTGCT GGACTTTTCG
CGCCAGACCC GGCTTGATCC CGAGGCCACG GAGATCAACC GCCTGATCGA GGCCACCGTC
AAGCTGATTG AAAACCAGGC CCTGATCAAG GGGGTGGCCA TTCATTTTCA TCCGGGGGAG
AGCCTGCCCG CCCTGGTGAT CGACCGCAGC CAGATGCAGA GCGTGCTGCT GAACATGATC
ATCAACGCCC TGGACGCCTC CGAGCCGTCG GACACCATAG AAATAGCCAC GGCCATGGCC
CGGTCGGCCG GCGCCCCGGG CCGGAACGGG GTGGAGATCA CCGTCGCGGA CACGGGATGC
GGCATTCCGC CGGAGAACCT GGACAAGCTC TTTGACCCCT TCTTCTCAAC CAAGGAGGTG
GGCAAGGGTA CCGGCCTCGG GCTGTCGGTC TCCTTCGGCA TCGTCAAGGA ACACAACGGC
AACATCCGGG TACAGAGCGA GGTGGGGGTG GGCTCCACCT TCTTTATCTG GCTGCCCGTG
GAAACCACAG GACAGGAAAA ATGA
|
|---|
| Protein sequence | MRIQAIHSTR FKLIVNFLVV CFLVGGTSLF IGGHLLYNAV VREAESQVKL ALSATRDVYN
TQIRYVNVAL NITSLGSGFR TAFFEHDIAD LRTRLERLKQ HAGLDFVGVV TATGQPLCRT
GPNAVPGTTE PALSVDNTIA RYVTSHKEAV AGTVVLPRSF LHIENPDLAE RIQFYSTGTE
GRDMACLAIA AAIPVFENTS SGEIAGALYG GIVLNQSTDL VDMARKTFFL DEIQKKIDAP
TVTLFFDDVR VATNMTDEKG LRAIGTRAPE TVRQDVLTMG KQITTRLPLA GKWHMAAYQP
IEDILGRRVG MMGIAVPEST YTGVQKKIFF FFLLATCIGA CVAIGMGYLL AYQIMRPIHR
LIKASQEVSE GSLAPDIGAI SRDPEIAILQ KTFQHMIEKM KQRRMESQDK IFQSEKQASV
GRLAAGVAHE INNPLTGVLT YTHMLLRRND LADDVRSDLT VIVESTERVR KIVKGLLDFS
RQTRLDPEAT EINRLIEATV KLIENQALIK GVAIHFHPGE SLPALVIDRS QMQSVLLNMI
INALDASEPS DTIEIATAMA RSAGAPGRNG VEITVADTGC GIPPENLDKL FDPFFSTKEV
GKGTGLGLSV SFGIVKEHNG NIRVQSEVGV GSTFFIWLPV ETTGQEK
|
|---|
| |