Gene Dole_0888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0888 
Symbol 
ID5693723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1038247 
End bp1040190 
Gene Length1944 bp 
Protein Length647 aa 
Translation table11 
GC content61% 
IMG OID641263485 
Producthistidine kinase 
Protein accessionYP_001528775 
Protein GI158520905 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGATAC AGGCCATACA TTCCACACGG TTCAAACTGA TCGTCAACTT TCTGGTTGTC 
TGTTTCCTGG TGGGCGGCAC ATCCCTTTTC ATCGGCGGCC ACCTGCTTTA CAACGCCGTT
GTCCGGGAGG CGGAAAGCCA GGTGAAGCTG GCCCTGAGCG CCACCCGGGA CGTGTACAAC
ACGCAAATCC GGTACGTCAA CGTGGCCCTG AACATCACCT CCCTGGGATC GGGGTTCAGA
ACCGCCTTTT TTGAACATGA CATTGCGGAC CTGCGGACCC GGCTGGAGCG GCTGAAGCAG
CACGCGGGCC TGGATTTCGT CGGCGTGGTA ACCGCCACCG GCCAGCCCCT GTGCCGGACC
GGGCCCAATG CCGTGCCCGG AACAACCGAG CCCGCCCTTT CGGTGGACAA CACCATCGCG
CGGTATGTGA CCAGCCACAA GGAGGCGGTG GCCGGAACGG TGGTTCTGCC CCGATCCTTT
CTCCATATTG AAAACCCCGA CCTTGCCGAA CGGATTCAAT TTTATTCCAC CGGCACCGAG
GGCCGGGACA TGGCCTGCCT GGCCATTGCG GCGGCCATTC CGGTGTTTGA GAATACCTCT
TCCGGAGAGA TCGCCGGCGC CCTTTACGGC GGCATCGTGC TGAACCAGAG CACCGACCTG
GTGGACATGG CGCGAAAGAC CTTCTTTCTT GATGAAATTC AGAAAAAGAT TGATGCCCCG
ACCGTGACCC TGTTTTTTGA TGATGTCCGC GTGGCCACCA ATATGACCGA TGAAAAGGGG
CTGCGGGCCA TCGGAACCAG AGCGCCCGAA ACGGTCCGGC AGGACGTGCT GACCATGGGG
AAACAGATCA CCACGCGCCT GCCCCTGGCC GGCAAATGGC ACATGGCCGC CTACCAGCCC
ATCGAAGATA TTCTGGGCCG ACGGGTTGGC ATGATGGGCA TTGCCGTGCC GGAGTCCACC
TATACGGGGG TCCAGAAGAA AATTTTCTTC TTTTTTCTGC TGGCCACCTG CATCGGGGCC
TGCGTCGCCA TCGGCATGGG GTATCTTCTG GCCTACCAGA TCATGCGGCC GATACACCGG
CTGATAAAGG CCAGCCAGGA GGTCTCCGAG GGCAGCCTCG CCCCGGATAT CGGCGCCATA
TCCAGGGACC CGGAAATCGC GATCCTGCAG AAAACCTTTC AGCACATGAT CGAAAAAATG
AAGCAGCGGC GCATGGAGAG CCAGGACAAG ATATTTCAGT CGGAAAAGCA GGCCAGTGTG
GGCCGGCTGG CCGCCGGCGT GGCCCATGAG ATCAATAACC CCCTCACCGG CGTGCTGACT
TACACCCACA TGCTGCTGCG GCGAAACGAC CTGGCCGACG ATGTCCGGTC CGACCTGACG
GTTATCGTCG AATCCACCGA GCGGGTGAGA AAAATCGTCA AGGGACTGCT GGACTTTTCG
CGCCAGACCC GGCTTGATCC CGAGGCCACG GAGATCAACC GCCTGATCGA GGCCACCGTC
AAGCTGATTG AAAACCAGGC CCTGATCAAG GGGGTGGCCA TTCATTTTCA TCCGGGGGAG
AGCCTGCCCG CCCTGGTGAT CGACCGCAGC CAGATGCAGA GCGTGCTGCT GAACATGATC
ATCAACGCCC TGGACGCCTC CGAGCCGTCG GACACCATAG AAATAGCCAC GGCCATGGCC
CGGTCGGCCG GCGCCCCGGG CCGGAACGGG GTGGAGATCA CCGTCGCGGA CACGGGATGC
GGCATTCCGC CGGAGAACCT GGACAAGCTC TTTGACCCCT TCTTCTCAAC CAAGGAGGTG
GGCAAGGGTA CCGGCCTCGG GCTGTCGGTC TCCTTCGGCA TCGTCAAGGA ACACAACGGC
AACATCCGGG TACAGAGCGA GGTGGGGGTG GGCTCCACCT TCTTTATCTG GCTGCCCGTG
GAAACCACAG GACAGGAAAA ATGA
 
Protein sequence
MRIQAIHSTR FKLIVNFLVV CFLVGGTSLF IGGHLLYNAV VREAESQVKL ALSATRDVYN 
TQIRYVNVAL NITSLGSGFR TAFFEHDIAD LRTRLERLKQ HAGLDFVGVV TATGQPLCRT
GPNAVPGTTE PALSVDNTIA RYVTSHKEAV AGTVVLPRSF LHIENPDLAE RIQFYSTGTE
GRDMACLAIA AAIPVFENTS SGEIAGALYG GIVLNQSTDL VDMARKTFFL DEIQKKIDAP
TVTLFFDDVR VATNMTDEKG LRAIGTRAPE TVRQDVLTMG KQITTRLPLA GKWHMAAYQP
IEDILGRRVG MMGIAVPEST YTGVQKKIFF FFLLATCIGA CVAIGMGYLL AYQIMRPIHR
LIKASQEVSE GSLAPDIGAI SRDPEIAILQ KTFQHMIEKM KQRRMESQDK IFQSEKQASV
GRLAAGVAHE INNPLTGVLT YTHMLLRRND LADDVRSDLT VIVESTERVR KIVKGLLDFS
RQTRLDPEAT EINRLIEATV KLIENQALIK GVAIHFHPGE SLPALVIDRS QMQSVLLNMI
INALDASEPS DTIEIATAMA RSAGAPGRNG VEITVADTGC GIPPENLDKL FDPFFSTKEV
GKGTGLGLSV SFGIVKEHNG NIRVQSEVGV GSTFFIWLPV ETTGQEK