Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_0694 |
Symbol | |
ID | 5693524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 821988 |
End bp | 823775 |
Gene Length | 1788 bp |
Protein Length | 595 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641263286 |
Product | lytic transglycosylase catalytic |
Protein accession | YP_001528581 |
Protein GI | 158520711 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000324493 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCAGAC CCGTTTTTAA AAGCGTTGTA TTCATTCTGA TTCTGACCCT GACAGGCACG GGGTGTCTGT CAACTTTATC TGAAAAAACA GGGGGTTTCC CGTTTACACG AAAAACCCCG GTCGTCTGCG AAGCCGACAC CGCCGAGGCG GTGGACGGTC CGGTGGACGT CACCCTGTCC GCCGAGGCCC CGGACCAGAT CCTGGAGGCC ACGGAACCGG CCGGCGAAGT CAATGAGACC CAGAAAGCCA TGGACGAGGC ACTGGACCTC TGCAAGGTTT CCCAGGACTT CTGGCAGAAG GGGGAGTTTG ACAACGCCAT TCAGGCCCTG GACCAGGCAT ACGCCCTGAT GCTCAAAGGG GATGTCGAGA GCGACGTCCA GCTCTTGCAG CAGAAGGAGG ATATCCGGTT TCTGATCTCA AAACGGATCC TGGAGATCTA CACCTCCCGC ACCACCGTGG TCAACGGAGC CCACAACGCC ATTCCCGTGA CCATCAACCG GGAAGTGCAA AAAGAGATCG ACCTGTTTAC CACCGGCCCG GAGCGGTCTT TTTTTATCGC CTCCTACCAG CGTTCGGGAA AATACCGGCC CCATATTCTC AAAAAACTGG CCGAGGCCGG GCTGCCCGCC GAACTCTCAT GGCTGCCCCT GATCGAAAGC GGCTTCAAAA CCAACGCCCT GTCCAAGGCC CGTGCCCTGG GGCTGTGGCA GTTCATCCCC TCCACGGGAT ACAAATTCGG CCTGGAGCGC AACCTTTACG TGGACCAGCG GCTGGACCCG GAACGGGCCA CCGACGCCGC CATTGATTAC CTCACGGCCC TGCACAGAAT TTTCGGCGAC TGGGCAACGG CCCTGGCCGC CTACAACTGC GGCGAAGGAA AAGTGCTTCA GGTGATCCGG GACCAGCGGG TGAATTACCT GGACAACTTC TGGGACCTCT ACCACCGGCT GCCCCGGGAA ACGGCCCGTT ACGTGCCCCG GTTCCTGGCC ACCCTGCACA TCGTTTCCAA CCTGGAAAAA TACGGTATGG ACACGGTGGT GCCGGAAGAT CCGATCTCCT ACGAAGTGGT GGAAACCGCC CGCCAGGTCC ATTTGAAAAA AATCGCCGAG GCAACCGGCA TCGCCTACGA CCTGCTCAAC GAGCTGAACC CGGAGCTGCG CCAGAACATC CTGCCGCCCA GTGCCTACCC CCTGCGGGTG CCCGCGGAAA AATCGGAAGC AGTGGTGGCC AGTATCAACT CTCTGCCCGT CACCGAACCG GCCCAGACCC AGTTTGCCTA CCACCGGGTC CGGTCCGGCG AGACCCTGTC CACCATTGCC CGGCGATACC GCACCTCGGT CTCCAACATC GCCCGGGCCA ACAATATTTA CAAACGCAAC TTCATCGTGG CCGGCAAAAT TCTCAAGATT CCCCTTTCCA GCAACTGGGT GGCCACCAAG ACCCAGAAAT TTGAAAAGGC CTCGGAAATA CCGGCGAGCC ACCGGGTGCG AAGCGGTGAG TCGCTCTGGA TTCTTGCCAA CCGTTACAGC ACCACGGTCA ACGCTATTCA GCGGTTAAAC GGCCTGTCCG GGACCAGCCT GCGCGTGGGC CAGGTCCTGA AAATCCCCGG CGGTGGCGCG GCCCCGGCAA CCGCGGCCGG CGACGGTAAA ACCTACACGG TACGGGCCGG CGACAGCCCC TTTACCATTG CCAGAAGCCA CAACATTCCC TTAAACCGCT TTCTTCAGAT CAACAACCTG AGTACGCGAA GCACCATCTA TCCGGGCCAG CAGGTCTGCC TGGAGTAG
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Protein sequence | MPRPVFKSVV FILILTLTGT GCLSTLSEKT GGFPFTRKTP VVCEADTAEA VDGPVDVTLS AEAPDQILEA TEPAGEVNET QKAMDEALDL CKVSQDFWQK GEFDNAIQAL DQAYALMLKG DVESDVQLLQ QKEDIRFLIS KRILEIYTSR TTVVNGAHNA IPVTINREVQ KEIDLFTTGP ERSFFIASYQ RSGKYRPHIL KKLAEAGLPA ELSWLPLIES GFKTNALSKA RALGLWQFIP STGYKFGLER NLYVDQRLDP ERATDAAIDY LTALHRIFGD WATALAAYNC GEGKVLQVIR DQRVNYLDNF WDLYHRLPRE TARYVPRFLA TLHIVSNLEK YGMDTVVPED PISYEVVETA RQVHLKKIAE ATGIAYDLLN ELNPELRQNI LPPSAYPLRV PAEKSEAVVA SINSLPVTEP AQTQFAYHRV RSGETLSTIA RRYRTSVSNI ARANNIYKRN FIVAGKILKI PLSSNWVATK TQKFEKASEI PASHRVRSGE SLWILANRYS TTVNAIQRLN GLSGTSLRVG QVLKIPGGGA APATAAGDGK TYTVRAGDSP FTIARSHNIP LNRFLQINNL STRSTIYPGQ QVCLE
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