Gene Dole_0536 details

Gene Information

• Locus tag: Dole_0536
• ID: 5693358
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 602144
• End bp: 603961
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641263120
• Product: type II secretion system protein E
• Protein accession: YP_001528423
• Protein GI: 158520553
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.466146
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGACG ATTTTGAAAA ACTGTTTGCC CCCAGAAAAG TATGCCAGAT CCTGGTTGCC 
AGAAAGATGA TCTCAAAGGA AACCGCCGAA GACCTGCTCA AACGGTATGG CGGGGTGAAG 
TCAAAACTGG AAAAGGCCCA GAGTGCCAGG CTGGCCGCTG CTCCGCCGGG CATAAGGATC 
AACAATCCCA TCACCATCGT GGATGTGATG GTGTCCATGG GGCTTTCCAG GGCCGACACC 
GAGGTGGGGG AACTGGATGA GGATGCGGTG TTCCAGGCTC TGGCCGAGGA GTGGGACGTT 
CCGTTTAAAA AAATAGACCC CCTGAAGCTG GACCTGGAGT TGGTCACCAA CACGATTCCC 
CGTTCCTTTG CCATGAACTA TCTCTCTTTG CCCATTGCCG TTGAAAACGG TGAGTTGATT 
GTGGCCACCC CCAACCCGTT CAACACCACG GTAATGGATG ATATTGCCCG GGTGGTACAC 
CGCAGGGTGG TGCCGGTGGT CAGCACCAAG TCGGACATCA TTCGTACCAT TAACGAGTTT 
TTTGGTTTTA AAAAATCCAT TGCCGCCGCT GAGACGCAGT TCGCGGCCCC CACCGTGGAC 
CTGGGCAACC TGGAACAGTA TGTGCGCCTG GCCGGTGAGG GTGAGCTTCC TTTAAATGAC 
AGCCACATCG TCAACGCGGT CAACCACCTG TTTTCTTACG CACTGGATCA GCATGCCAGT 
GATATTCATA TTGAGCCCAA GCGGGACATC ACCATGGTGA GAATGCGTAT CGACGGTGTG 
CTGCACACCA TTTACAAGAT ACCCAAGAAA GTTCACTACG CCCTGGTGAG TCGTATCAAA 
AACCTGGCGC GCATGGACAT GGCTGAAAAG CGGCGGCCCC AGGACGGTCG CATCAAAACC 
GACAAAGGGG GCAGTGAGGC GGAGGTTCGG GTCTCCACGA TTCCCGTGGC ATTTGGAGAA 
AAAGTGGTCA TGCGGATCAT GGACCCGGAC ATCCTGTTTC AGCCGCTGGA GGGCCTGGGT 
TTTTCCGCCG AGGAGATGAA TATTTACCAG CAGATGGCCA ACCGGCCCAA CGGCATCATC 
CTGGTGTGCG GTCCCACGGG CAGCGGCAAG TCCACCACCC TTTACTCCAC GCTGCGGTAT 
CTCTCTACTC CGGACGTCAA TATCACCACC GTGGAAGATC CCATTGAAAT GGTGCATGAG 
GACTTCAATC AGATTTCGGT TCAGCCGACG GTGGGCATCA CGTTTGGATC AATTCTGAGA 
AATATTCTTC GTCAGGACCC GGACATCATC ATGATCGGTG AAATGCGGGA CCTGGAAACC 
GCCCAGAATG CCATTCAGGC CTCGCTGACC GGCCATCTGG TGCTCTCCAC CCTGCACACC 
AACGACGCTC CTTCTTCTAT CATCCGACTG CTGGATATCG GGGTCCCCAA CTTCCTGGTG 
CAGGCCACAC TGGTGGGCGT CGTGTCACAG CGCCTGGTGA GACGGATCTG TCCTTACTGC 
CGGGAACCCA TTGAAATAGA TGCCGCTGAG TTTGAGACCA TGGGCATTCA GACGGGGAAA 
CGGGGGAAGC TGAAGTTGTA CAAGGGTAAG GGATGCACCA AGTGCAGAGG CACCGGCTAC 
AAAGGCCGGA CCGGCATTTT TGAGCTGCTG CCATACACGG AAGCCATTCG GGCGTTGACC 
CTTCCCCAGA CCGATATGGC AAAGATTCAG GCCAAAAGCA GGGAAGAGGG TATGATGACC 
CTGCGAGAAG CGGCGGTGAA AAAGATGCTG CGGGGTGAAA CTACCTATCA GGAGGTGCTG 
CGGGTCACCT GGGAATAA 

 

Protein sequence

MIDDFEKLFA PRKVCQILVA RKMISKETAE DLLKRYGGVK SKLEKAQSAR LAAAPPGIRI 
NNPITIVDVM VSMGLSRADT EVGELDEDAV FQALAEEWDV PFKKIDPLKL DLELVTNTIP 
RSFAMNYLSL PIAVENGELI VATPNPFNTT VMDDIARVVH RRVVPVVSTK SDIIRTINEF 
FGFKKSIAAA ETQFAAPTVD LGNLEQYVRL AGEGELPLND SHIVNAVNHL FSYALDQHAS 
DIHIEPKRDI TMVRMRIDGV LHTIYKIPKK VHYALVSRIK NLARMDMAEK RRPQDGRIKT 
DKGGSEAEVR VSTIPVAFGE KVVMRIMDPD ILFQPLEGLG FSAEEMNIYQ QMANRPNGII 
LVCGPTGSGK STTLYSTLRY LSTPDVNITT VEDPIEMVHE DFNQISVQPT VGITFGSILR 
NILRQDPDII MIGEMRDLET AQNAIQASLT GHLVLSTLHT NDAPSSIIRL LDIGVPNFLV 
QATLVGVVSQ RLVRRICPYC REPIEIDAAE FETMGIQTGK RGKLKLYKGK GCTKCRGTGY 
KGRTGIFELL PYTEAIRALT LPQTDMAKIQ AKSREEGMMT LREAAVKKML RGETTYQEVL 
RVTWE