| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0488 |
|---|
| Symbol | |
|---|
| ID | 5693309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 553377 |
|---|
| End bp | 553862 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641263071 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001528375 |
|---|
| Protein GI | 158520505 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4967] Tfp pilus assembly protein PilV |
|---|
| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000470807 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCAA AAAACAGCTT GGCGAAAAGA AGGGCGAACC GGTCTTGCAG CATCGGCCGA
AACGGTTTTA CCCTTATCGA GGTGCTGATG GCTGTGGCCA TCTTTTCCAT CGGGGTGCTG
GGGGCCGCTT CCATGCAGAC CAGCGCGGTG AGTACCACCA CGCGGCTTCG CAAGGCCACC
ATGGGCGTGG CCTGTGCCTC GGATGTGATG GAGCGGCTGT TTTCCCTGGA TTTTTCCCAT
CCCTACCTGA GTGCCGGCAC CCACGCGCCG GGGGACGGCG AGGACGAGGA CGGCGATGGC
GAGGATGACA TGCCGGTAAT CCCGGAATAC AACAGCGTTT TTGAGTCCAT CACGTGGAGG
GTGGACAATC AGGATCTGGA TGTTTCAACC GCCGGTATTG ACGCCAAGGT GATCACTGTA
ACCGTGCTCT GGGGCGGCGG TTCCAGAAAT ATCACCCTGA CAAGCGCAAG AACGTTCAAG
GCATGA
|
|---|
| Protein sequence | MNAKNSLAKR RANRSCSIGR NGFTLIEVLM AVAIFSIGVL GAASMQTSAV STTTRLRKAT
MGVACASDVM ERLFSLDFSH PYLSAGTHAP GDGEDEDGDG EDDMPVIPEY NSVFESITWR
VDNQDLDVST AGIDAKVITV TVLWGGGSRN ITLTSARTFK A
|
|---|
| |