| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0487 |
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| Symbol | |
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| ID | 5693308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 552575 |
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| End bp | 553354 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641263070 |
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| Product | Tfp pilus assembly protein PilW-like protein |
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| Protein accession | YP_001528374 |
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| Protein GI | 158520504 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000390624 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACAGCC AGAAACACCT GTTAAGATCG GCATATGGTT TTACGCTGGC GGAATTGCTG
GTGGCCATGG CGGCAGCATC TTTGATCATG GCGCTGGTGG TCGCCACCTA TTTCGGCCAG
ACCACCACCA ACAGCTCCCA GGGCCAGGTG GTGGCCATGC AGCAGAATCT GCGGGTGGCC
CTTCAGGTCA TGGAGCGGGA GATCATGATG GCGGGCTACA AGCCCAGACC GGGCACGTCC
GTGCCCGCCG CTTTCGGCAT TATCACCGCT GACGCTGACG AACTGGTTAT CTCCATGGTG
GAGCCGGTAA CCGATCTGGA CAGGATTGAT AACGACAGCG ACGGAACGGT GGATGAGTCC
GGCGAAAAAG ACGGGCGGGA CAATGACGAT GGTGGAGCCG GTGAGGTGGA TGAGGCGGGA
GAGATCATCA CCATTCGTTA CCAGCTTTAT GATTCACTGG GTGATGGGGA TCAGGACCTG
GGAAGGGAAG AACTCAACTC TAACGTGTCT GTCTCCGCCA TTGCCGAGAA TATAGAGGCT
CTCGAGTTTG TGTATACGCT GGCCGACGGC ACCCAGCCGA CCCCCCCTGT ATCGGCGGCC
GACCTGCCGG ATATTCGGGC TATTGGCATC TCTATTCTGG CCAGAACGGA AGAGCCGTCG
GTCTCCGGGT ATGTGGACCG GATTATTTAC AAAACGCTGT CCGGCACTGA CTGGGGAGCC
TATAATGATG CGTACCGGCG ACAGCTTTCC GTTGTCACGG TGAATCGCAG AAATTTTTAA
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| Protein sequence | MHSQKHLLRS AYGFTLAELL VAMAAASLIM ALVVATYFGQ TTTNSSQGQV VAMQQNLRVA
LQVMEREIMM AGYKPRPGTS VPAAFGIITA DADELVISMV EPVTDLDRID NDSDGTVDES
GEKDGRDNDD GGAGEVDEAG EIITIRYQLY DSLGDGDQDL GREELNSNVS VSAIAENIEA
LEFVYTLADG TQPTPPVSAA DLPDIRAIGI SILARTEEPS VSGYVDRIIY KTLSGTDWGA
YNDAYRRQLS VVTVNRRNF
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