| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0470 |
|---|
| Symbol | rho |
|---|
| ID | 5693291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 535141 |
|---|
| End bp | 536385 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641263053 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_001528357 |
|---|
| Protein GI | 158520487 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000467448 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAT CCGAGCTGAA AAAAAAGAAG ATGGATGAGT TAAAGGAGAT TGCCGCCGGT
TACGAGGTCG ACAGCGCCGG CATGAAAAAG CAGGAACTGA TTTTTTCGAT TCTGCAGGCC
GAGGCGGAAA ACAACGGGTA TATCTTCGGT GAAAGCACGC TGGAGGTCCT TTCCGACGGG
TTCGGTTTTT TACGGTCCCC GGACAGCAGC TATCTGCCGG GGCTGGATGA TATTTACGTG
TCGCCTTCCC AGATTCGGCG GTTCAACCTC CGTACCGGCG ACATCGTGTC GGGTCAGATC
CGTCAGCCCA AGGAGAATGA GCGCTATTTC GCGCTGCTGA AGGTGGAGGC CATCAACCAC
GAAGACCCGG AGATCGCGCG GCACAAAACC CCTTTTGACA ACCTCACCCC TCTGTTCCCC
AATGAAAAGA TCAAGCTGGA GCGCGAGTCG GACAACTACT CCATGCGGAT CATGGACCTG
CTGACCCCCA TCGGTTTCGG CCAGCGGGGG CTGATCGTGT CGCCGCCCCG GGCCGGCAAG
ACCATGCTGC TGCAGAACAT TGCCAACAGC ATCATTGCCA GCCACAAGAA GGTGGTGCCC
TTTGTGCTGC TCATCGATGA ACGGCCTGAG GAAGTGACCG ACATGAAGCG TTCCGTTAAC
GCTGAAGTGA TCAGCTCCAC GTTTGACGAG CCGGCCGACC GCCATGTGCA GGTGGCGGAA
ATGGTCATTG AAAAGGCACG GCGCCTGGTG GAGCATAAAA AGGATGTGGT GATCCTGCTT
GACAGCATCA CCCGCCTGGC CCGGGCTTAC AACTCGGTGG TGCCCTCCAG CGGCAAGGTG
CTGTCCGGCG GCGTGGATTC CAACGCCCTG CACCGGCCCA AGCGGTTTTT CGGCGCGGCC
CGCAATATTG AGGAGGGCGG CAGCCTCACC ATCATGGCCA CGGCCCTGAT CGACACCGGC
AGCCGCATGG ATGATGTGAT TTTTGAGGAG TTCAAGGGCA CCGGCAACAT GGAGCTTCAT
CTGGACCGGA AGCTGGCCGA TCGGCGCGTC TACCCGGCCA TCGATATCAA CCGGTCCGGC
ACCCGTAAAG AGGAACTGCT GGTGGAAAAG GATGTGCTCA ACCGGGTATG GGTGCTGCGC
AAGCTGCTGG CGACCCTGAA CTCCGTGGAC GGCATGGAAT TTCTGCTCGA CAAGATGAGC
AGCACCAAAA GCAATAAGGA TTTTATGGAT GCCATGAATT CATAG
|
|---|
| Protein sequence | MDISELKKKK MDELKEIAAG YEVDSAGMKK QELIFSILQA EAENNGYIFG ESTLEVLSDG
FGFLRSPDSS YLPGLDDIYV SPSQIRRFNL RTGDIVSGQI RQPKENERYF ALLKVEAINH
EDPEIARHKT PFDNLTPLFP NEKIKLERES DNYSMRIMDL LTPIGFGQRG LIVSPPRAGK
TMLLQNIANS IIASHKKVVP FVLLIDERPE EVTDMKRSVN AEVISSTFDE PADRHVQVAE
MVIEKARRLV EHKKDVVILL DSITRLARAY NSVVPSSGKV LSGGVDSNAL HRPKRFFGAA
RNIEEGGSLT IMATALIDTG SRMDDVIFEE FKGTGNMELH LDRKLADRRV YPAIDINRSG
TRKEELLVEK DVLNRVWVLR KLLATLNSVD GMEFLLDKMS STKSNKDFMD AMNS
|
|---|
| |