Gene Dole_0426 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0426 
Symbol 
ID5693245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp490723 
End bp492519 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content52% 
IMG OID641263007 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_001528313 
Protein GI158520443 
COG category[T] Signal transduction mechanisms 
COG ID[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.830485 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCCAA ATACACGTCG CCGCAACCGG ACAAACCTGC ACACATCTCC ATGGATTATC 
ATCGGATCGG TGGGAATCCT GCTGATCGTC GTGGTGGTCC TGGCATATCA GAACTACAGT
CGCGAAAAAA AATATATGTC CCAAATTTTG AGTGAAAAGG GCGCCGCGAT CATCAAGGCG
GTGGAAGCCG GCGCCCGTAC GGGAATGATG GGGATGATGT GGGGCGGACA GCAGGTCCAG
TCATTAATCG AGGAAACCGC CCAACTGTCG GATGTCTTCT ATATTACCGT GGTAAATCGC
AAAGGGTTGG TTTTGGCCAG CAGCAATCGC GGATTGATCG GCACCCAAAT GAACAGCGGT
TTTCCCGAAA AAGGACTTGA TCAACCAGAG GAAATCAACT GGCGGTATAA GCGCATCGAT
GATCAGCGGA ACACTTTTGA AGTGTACCGA CTTTTTATGC CGATCACTGA CCAGGAGCGT
CAGATGGGTG ATCGTATGTG CCAAATGAAG CAAGGGCGCA AGATGATGAT GCGGTCCGAT
AACGACTGGT GTTTTCCTAC CTCAAGCGGC GACAGCGATC AGATCATACT GGTTGGCTTG
AACCCTCAGC CCTTTGAAGA AGGGCGCAAG GAGGACATCC GCAACACGGC CATCATATCA
GGCATTTTGA TTTTACTGGG GCTGGCCGGT TTTATTTCGA TGTTCTGGAT GCAGGGATAC
CGCTCGGCTA AAAAATCACT TCAGGACACC AGCGCCATTA AGGACCAGGT GGTCACCAGC
CTCCCCGTGG GTTTGATCGC CACGGATAAA CACGGAAAGA TCGCATTTTA CAACAGTGCC
GCAGAACGGA TCACCGGGCT TGACTTGGCC CAGGCGCGGG GGAAGGAACC CGACACTGTC
CTACCAAGGC ATTTATGTGG GCTGAAGGAA TCACTGGATC TTGGAGAGTC GATATTCGAA
AAAGAAATGG AATGTGAGTT CACCGAAAAC AAGATTGTCC CGGTGAGCAT CAGCGCCTCG
AAAATTATCA ACGAAGAAGG TCAGTTTGTC GGGCAGGTTC TGATCATCCG AGATCTTGGG
GAGGTTCGCC GCCTTCAGGA TGAAATCCGC CGCAAGGAAA AGCTGGCGGC GATCGGGGAG
TTGGCGGCCG GCGTGGCCCA TGAAATTAGA AACCCGCTGA GTTCCATCAA AGGCATCGCT
TCCTACTACA AGAGCAAGTT CGAGGACGGC AGCGAGGACA AAGAGATGGC CGGGGTCATG
ATCGAGGAGG TGGATCGCCT CAGCCGAGTC ATCAGCGAGC TGCTGGAGTT CGCCAGGCCG
ACGAAATTAA ACAGGAAGCT ATCCGATATG AATGAACTGC TGAAACATTC AACCCGGCTG
GTCGAGCAGG AAGCAGCGGC GAAAAAAGTC GATATTCAAC TCAATCTTAC ATCCGAATCC
ATTGAGGCCG ATGTCGATCC GGATCGTTTG ACCCAGTGCT TTTTGAATCT GTTTCTGAAT
GCCTTGCAAG CCATGGAAAG TGGCGGCCGG TTGACTGTTT CCAGCTCCAC AGGCGCAAAC
GGGAACGTTG CAATTGACAT CAAGGATAAC GGCTCGGGGA TATCCGCAGA AGATCTCAGC
AAGATATTCG ACCCCTATTT TACCACCAAA CCAAAAGGCA CCGGCTTGGG CTTGGCGATT
GTGCACAAGA TTATCGAAGC CCACCAGGGG CAAATCAAAG TTCGAAGCAC CATTGGTCAG
GGCACCGTGT TCTCGATTGC CCTGCCGCTT GGGGACAGCG AAATGAGGTT GTCATGA
 
Protein sequence
MIPNTRRRNR TNLHTSPWII IGSVGILLIV VVVLAYQNYS REKKYMSQIL SEKGAAIIKA 
VEAGARTGMM GMMWGGQQVQ SLIEETAQLS DVFYITVVNR KGLVLASSNR GLIGTQMNSG
FPEKGLDQPE EINWRYKRID DQRNTFEVYR LFMPITDQER QMGDRMCQMK QGRKMMMRSD
NDWCFPTSSG DSDQIILVGL NPQPFEEGRK EDIRNTAIIS GILILLGLAG FISMFWMQGY
RSAKKSLQDT SAIKDQVVTS LPVGLIATDK HGKIAFYNSA AERITGLDLA QARGKEPDTV
LPRHLCGLKE SLDLGESIFE KEMECEFTEN KIVPVSISAS KIINEEGQFV GQVLIIRDLG
EVRRLQDEIR RKEKLAAIGE LAAGVAHEIR NPLSSIKGIA SYYKSKFEDG SEDKEMAGVM
IEEVDRLSRV ISELLEFARP TKLNRKLSDM NELLKHSTRL VEQEAAAKKV DIQLNLTSES
IEADVDPDRL TQCFLNLFLN ALQAMESGGR LTVSSSTGAN GNVAIDIKDN GSGISAEDLS
KIFDPYFTTK PKGTGLGLAI VHKIIEAHQG QIKVRSTIGQ GTVFSIALPL GDSEMRLS